Evidence map›Paper›PMID 28846502›Full record

ArticlemAbs

Rare, high-affinity anti-pathogen antibodies from human repertoires, discovered using microfluidics and molecular genomics.

Adam S Adler, Rena A Mizrahi, Matthew J Spindler, Matthew S Adams, Michael A Asensio, Robert C Edgar, Jackson Leong, Renee Leong, Lucy Roalfe, Rebecca White and 2 more

Open access · goldAbstract read
In one paragraph

Article in mAbs. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 33 papers.

0numbers the graph read from it
0cells of the map it votes in
33citing papers in PubMed
4.7field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

33 citing papers in PubMed, 41 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Review
  5. Article
  6. Article
  7. Review
  8. Article
  9. Article
  10. Antibody repertoire sequencing analysis.Acta biochimica et biophysica Sinica · 2022
    Review
  11. Review
  12. Review
  13. Article
  14. Article
  15. Hybridoma technology: is it still useful?Current research in immunology · 2021
    Review
  16. Review
  17. Article
  18. Liquid drop of DNA libraries reveals total genome information.Proceedings of the National Academy of Sciences of the United States of America · 2020
    Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 3 institutions in 2 countries.

Adam S Adlera GigaGen Inc. , 407 Cabot Road, South San Francisco , CA , USA.
Rena A Mizrahia GigaGen Inc. , 407 Cabot Road, South San Francisco , CA , USA.
Matthew J Spindlera GigaGen Inc. , 407 Cabot Road, South San Francisco , CA , USA.
Matthew S Adamsa GigaGen Inc. , 407 Cabot Road, South San Francisco , CA , USA.
Michael A Asensioa GigaGen Inc. , 407 Cabot Road, South San Francisco , CA , USA.
Robert C Edgara GigaGen Inc. , 407 Cabot Road, South San Francisco , CA , USA.
Jackson Leonga GigaGen Inc. , 407 Cabot Road, South San Francisco , CA , USA.
Renee Leonga GigaGen Inc. , 407 Cabot Road, South San Francisco , CA , USA.
Lucy Roalfeb Immunobiology Section , Great Ormond Street Institute of Child Health, University College London , London , England, United Kingdom.
Rebecca Whiteb Immunobiology Section , Great Ormond Street Institute of Child Health, University College London , London , England, United Kingdom.
David Goldblattb Immunobiology Section , Great Ormond Street Institute of Child Health, University College London , London , England, United Kingdom.
David S Johnsona GigaGen Inc. , 407 Cabot Road, South San Francisco , CA , USA.
GigaGen (United States) · USCabot (United States) · USGreat Ormond Street Hospital · GB

Funding

Recombinant Hyperimmune Gammaglobulin for Primary ImmunodeficiencyR44AI124901 · NIAID · GIGAGEN, INC. · PI JOHNSON, DAVID SCOTT · 2016 to 2017
$1.5M
NIAID NIH HHS R44 AI124901
6 · The paper itself

Abstract

Affinity-matured, functional anti-pathogen antibodies are present at low frequencies in natural human repertoires. These antibodies are often excellent candidates for therapeutic monoclonal antibodies. However, mining natural human antibody repertoires is a challenge. In this study, we demonstrate a new method that uses microfluidics, yeast display, and deep sequencing to identify 247 natively paired anti-pathogen single-chain variable fragments (scFvs), which were initially as rare as 1 in 100,000 in the human repertoires. Influenza A vaccination increased the frequency of influenza A antigen-binding scFv within the peripheral B cell repertoire from <0.1% in non-vaccinated donors to 0.3-0.4% in vaccinated donors, whereas pneumococcus vaccination did not increase the frequency of antigen-binding scFv. However, the pneumococcus scFv binders from the vaccinated library had higher heavy and light chain Replacement/Silent mutation (R/S) ratios, a measure of affinity maturation, than the pneumococcus binders from the corresponding non-vaccinated library. Thus, pneumococcus vaccination may increase the frequency of affinity-matured antibodies in human repertoires. We synthesized 10 anti-influenza A and nine anti-pneumococcus full-length antibodies that were highly abundant among antigen-binding scFv. All 10 anti-influenza A antibodies bound the appropriate antigen at K

Indexed as

Amino Acid SequenceAntibodies, MonoclonalAntibody AffinityAnti-Infective AgentsGenomicsHigh-Throughput Nucleotide SequencingHumansInfluenza A virusMicrofluidicsPeptide LibrarySingle-Chain AntibodiesStreptococcus pneumoniaeAntibodies, MonoclonalAnti-Infective AgentsPeptide LibrarySingle-Chain Antibodiesantibody repertoiredeep sequencingInfluenza Amicrofluidicspneumococcus

Identifiers

PMID28846502
PMCPMC5680809
OpenAlexW2747994467

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.