Evidence map›Paper›PMID 28846112›Full record

ArticleOncogene2017

Epigenetic regulation of RNA polymerase III transcription in early breast tumorigenesis.

J-L Park, Y-S Lee, M-J Song, S-H Hong, J-H Ahn, E-H Seo, S-P Shin, S-J Lee, B H Johnson, M R Stampfer and 3 more

Open access · greenAbstract read
PubMed Publisher
In one paragraph

Article in Oncogene, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 33 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
33citing papers in PubMed, 2 pooled it
1.8field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

33 citing papers in PubMed, 2 syntheses or guidelines pooled it, 44 citations in OpenAlex.

  1. Pooled it
  2. Pooled it
  3. Article
  4. Article
  5. Non-coding 886 (Epigenetics · 2024
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  6. Review
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  8. Review
  9. Crosstalk between vault RNAs and innate immunity.Molecular biology reports · 2024
    Review
  10. AbioRxiv : the preprint server for biology · 2024
    Article
  11. Article
  12. Article
  13. Review
  14. Article
  15. Ribosome biogenesis in disease: new players and therapeutic targets.Signal transduction and targeted therapy · 2023
    Review
  16. Article
  17. Are We Studying Non-Coding RNAs Correctly? Lessons from nc886.International journal of molecular sciences · 2022
    Review
  18. Article
  19. Article
  20. Vault RNAs: hidden gems in RNA and protein regulation.Cellular and molecular life sciences : CMLS · 2021
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 7 institutions in 2 countries.

J-L ParkPersonalized Genomic Medicine Research Center, KRIBB, Daejeon, Korea.
Y-S LeeRare Cancer Branch, Research Institute, National Cancer Center, Goyang-si, Korea.
M-J SongDepartment of Environmental Medical Biology, Yonsei University College of Medicine, Seoul, Korea.
S-H HongRare Cancer Branch, Research Institute, National Cancer Center, Goyang-si, Korea.
J-H AhnDepartment of Life and Nanopharmaceutical Sciences and Department of Oriental Pharmacy, Kyung Hee University, Seoul, Korea.
E-H SeoPersonalized Genomic Medicine Research Center, KRIBB, Daejeon, Korea.
S-P ShinImmunotherapeutics Branch, Research Institute, National Cancer Center, Goyang-si, Korea.
S-J LeeImmunotherapeutics Branch, Research Institute, National Cancer Center, Goyang-si, Korea.
B H JohnsonDepartment of Biochemistry and Molecular Biology, University of Texas Medical Branch, Galveston, USA.
M R StampferBiological Systems and Engineering Division, Lawrence Berkeley National Laboratory, Berkeley, CA, USA.
H-P KimDepartment of Environmental Medical Biology, Yonsei University College of Medicine, Seoul, Korea.
S-Y KimPersonalized Genomic Medicine Research Center, KRIBB, Daejeon, Korea.
Y S LeeDepartment of Biochemistry and Molecular Biology, University of Texas Medical Branch, Galveston, USA.
National Cancer Center · KRKorea University of Science and Technology · KRYonsei University · KRKorea Research Institute of Bioscience and Biotechnology · KRKyung Hee University · KRLawrence Berkeley National Laboratory · USThe University of Texas Medical Branch at Galveston · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

RNA polymerase III (Pol III) transcribes medium-sized non-coding RNAs (collectively termed Pol III genes). Emerging diverse roles of Pol III genes suggest that individual Pol III genes are exquisitely regulated by transcription and epigenetic factors. Here we report global Pol III expression/methylation profiles and molecular mechanisms of Pol III regulation that have not been as extensively studied, using nc886 as a representative Pol III gene. In a human mammary epithelial cell system that recapitulates early breast tumorigenesis, the fraction of actively transcribed Pol III genes increases reaching a plateau during immortalization. Hyper-methylation of Pol III genes inhibits Pol III binding to DNA via inducing repressed chromatin and is a determinant for the Pol III repertoire. When Pol III genes are hypo-methylated, MYC amplifies their transcription, regardless of its recognition DNA motif. Thus, Pol III expression during tumorigenesis is delineated by methylation and magnified by MYC.

Indexed as

Epigenesis, GeneticTranscription, GeneticBreastCells, CulturedCell Transformation, NeoplasticChromatinDNADNA MethylationEpithelial CellsHumansProtein BindingProto-Oncogene Proteins c-mycRNA Polymerase IIIRNA, UntranslatedChromatinDNAMYC protein, humanProto-Oncogene Proteins c-mycRNA Polymerase IIIRNA, Untranslated

Identifiers

PMID28846112
OpenAlexW2747828383

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.