Evidence map›Paper›PMID 28844486›Full record

ArticleAmerican journal of human genetics2017

Sensitive Monogenic Noninvasive Prenatal Diagnosis by Targeted Haplotyping.

Carlo Vermeulen, Geert Geeven, Elzo de Wit, Marjon J A M Verstegen, Rumo P M Jansen, Melissa van Kranenburg, Ewart de Bruijn, Sara L Pulit, Evelien Kruisselbrink, Zahra Shahsavari and 13 more

Open access · bronzeAbstract read
In one paragraph

Article in American journal of human genetics, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 38 papers.

0numbers the graph read from it
0cells of the map it votes in
38citing papers in PubMed
17.5field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

38 citing papers in PubMed, 119 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Review
  6. Article
  7. Targeted Locus Amplification and Haplotyping.Methods in molecular biology (Clifton, N.J.) · 2023
    Article
  8. Non-invasive prenatal diagnosis (NIPD): current and emerging technologies.Extracellular vesicles and circulating nucleic acids · 2023
    Review
  9. Article
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  11. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

23 authors at 9 institutions in 4 countries.

Carlo VermeulenHubrecht Institute-KNAW and University Medical Center Utrecht, Uppsalalaan 8, 3584 CT Utrecht, the Netherlands.
Geert GeevenHubrecht Institute-KNAW and University Medical Center Utrecht, Uppsalalaan 8, 3584 CT Utrecht, the Netherlands.
Elzo de WitHubrecht Institute-KNAW and University Medical Center Utrecht, Uppsalalaan 8, 3584 CT Utrecht, the Netherlands.
Marjon J A M VerstegenHubrecht Institute-KNAW and University Medical Center Utrecht, Uppsalalaan 8, 3584 CT Utrecht, the Netherlands.
Rumo P M JansenDepartment of Medical Genetics, University Medical Center Utrecht, Heidelberglaan 100, 3584 CX Utrecht, the Netherlands.
Melissa van KranenburgHubrecht Institute-KNAW and University Medical Center Utrecht, Uppsalalaan 8, 3584 CT Utrecht, the Netherlands.
Ewart de BruijnDepartment of Medical Genetics, University Medical Center Utrecht, Heidelberglaan 100, 3584 CX Utrecht, the Netherlands.
Sara L PulitDepartment of Medical Genetics, University Medical Center Utrecht, Heidelberglaan 100, 3584 CX Utrecht, the Netherlands.
Evelien KruisselbrinkDepartment of Pediatric Pulmonology, Wilhelmina Children's Hospital, University Medical Center Utrecht, Lundlaan 6, 3584 EA Utrecht, the Netherlands.
Zahra ShahsavariDepartment of Laboratory Medicine, Faculty of Paramedical Sciences, Shahid Beheshti University of Medical Sciences, Arabi Ave, 19839-63113 Tehran, Iran.
Davood OmraniDepartment of Medical Genetics, School of Medicine, Shahid Beheshti University of Medical Sciences, Arabi Ave, 1985717443 Tehran, Iran.
Fatemeh ZeinaliKariminejad-Najmabadi Pathology & Genetics Center, #2 Medical Building, Sanat Sq., 14667-13713 Sharak Gharb, Tehran, Iran.
Hossein NajmabadiKariminejad-Najmabadi Pathology & Genetics Center, #2 Medical Building, Sanat Sq., 14667-13713 Sharak Gharb, Tehran, Iran.
Theodora KatsilaDepartment of Pharmacy, University of Patras University Campus, 26504 Patras-Rio, Greece.
Christina VrettouDepartment of Medical Genetics, National and Kapodistrian University of Athens, Choremio Research Laboratory, "Aghia Sophia" Children's Hospital, 11527 Athens, Greece.
George P PatrinosDepartment of Pharmacy, University of Patras University Campus, 26504 Patras-Rio, Greece.
Joanne Traeger-SynodinosDepartment of Medical Genetics, National and Kapodistrian University of Athens, Choremio Research Laboratory, "Aghia Sophia" Children's Hospital, 11527 Athens, Greece.
Erik SplinterCergentis B.V., Yalelaan 62, 3584 CM Utrecht, the Netherlands.
Jeffrey M BeekmanDepartment of Pediatric Pulmonology, Wilhelmina Children's Hospital, University Medical Center Utrecht, Lundlaan 6, 3584 EA Utrecht, the Netherlands.
Sima Kheradmand KiaSara Medical Genetics Lab, Shariati St., Niam St., No 53, PO 1948854151 Tehran, Iran.
Gerard J Te MeermanDepartment of Genetics, University Medical Center Groningen, Hanzeplein 1, 9713 GZ Groningen, the Netherlands.
Hans Kristian Ploos van AmstelDepartment of Medical Genetics, University Medical Center Utrecht, Heidelberglaan 100, 3584 CX Utrecht, the Netherlands.
Wouter de LaatHubrecht Institute-KNAW and University Medical Center Utrecht, Uppsalalaan 8, 3584 CT Utrecht, the Netherlands. Electronic address: w.delaat@hubrecht.eu.
Hubrecht Institute for Developmental Biology and Stem Cell Research · NLUniversity Medical Center Utrecht · NLUniversity Hospital Heidelberg · DENational and Kapodistrian University of Athens · GRShahid Beheshti University of Medical Sciences · IRUniversity of Patras · GRCergentis (Netherlands) · NLUniversity Medical Center Groningen · NLWilhelmina Children's Hospital · NL

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

During pregnancy, cell-free DNA (cfDNA) in maternal blood encompasses a small percentage of cell-free fetal DNA (cffDNA), an easily accessible source for determination of fetal disease status in risk families through non-invasive procedures. In case of monogenic heritable disease, background maternal cfDNA prohibits direct observation of the maternally inherited allele. Non-invasive prenatal diagnostics (NIPD) of monogenic diseases therefore relies on parental haplotyping and statistical assessment of inherited alleles from cffDNA, techniques currently unavailable for routine clinical practice. Here, we present monogenic NIPD (MG-NIPD), which requires a blood sample from both parents, for targeted locus amplification (TLA)-based phasing of heterozygous variants selectively at a gene of interest. Capture probes-based targeted sequencing of cfDNA from the pregnant mother and a tailored statistical analysis enables predicting fetal gene inheritance. MG-NIPD was validated for 18 pregnancies, focusing on CFTR, CYP21A2, and HBB. In all cases we could predict the inherited alleles with >98% confidence, even at relatively early stages (8 weeks) of pregnancy. This prediction and the accuracy of parental haplotyping was confirmed by sequencing of fetal material obtained by parallel invasive procedures. MG-NIPD is a robust method that requires standard instrumentation and can be implemented in any clinic to provide families carrying a severe monogenic disease with a prenatal diagnostic test based on a simple blood draw.

Indexed as

Polymorphism, Single NucleotideAdrenal Hyperplasia, CongenitalBiomarkersCells, CulturedCystic FibrosisCystic Fibrosis Transmembrane Conductance RegulatorDNAFemaleHaplotypesHumansPregnancyPrenatal DiagnosisSteroid 21-HydroxylaseBiomarkersCFTR protein, humanCYP21A2 protein, humanCystic Fibrosis Transmembrane Conductance RegulatorDNASteroid 21-Hydroxylasebeta thalassemiaCAHcell-free DNAcfDNAcongenital adrenal hyperplasiacystic fibrosismonogenic diseasesNIPDnon-invasive prenatal diagnosistargeted haplotypingtargeted locus amplificationTLA

Identifiers

PMID28844486
PMCPMC5590845
OpenAlexW2746045902

What OpenQuestion holds

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LicenceCC BY-NC-ND
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.