Evidence map›Paper›PMID 28842898›Full record

ArticleMethods in molecular biology (Clifton, N.J.)2017

Bisulfite Sequencing for DNA Methylation Analysis of Primary Muscle Stem Cells.

Kohei Miyata, Masashi Naito, Tomoko Miyata, Sho Mokuda, Hiroshi Asahara

Abstract read
In one paragraph

Article in Methods in molecular biology (Clifton, N.J.), 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
0.9field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 13 citations in OpenAlex.

  1. Review
  2. Review
  3. Review
  4. Article
  5. DNA Methylation in Pituitary Adenomas: A Scoping Review.International journal of molecular sciences · 2025
    Article
  6. Review
  7. Genome-Wide DNA Methylation Differences betweenAnimals : an open access journal from MDPI · 2023
    Article
  8. Article
  9. Methylation ofAnnals of translational medicine · 2018
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 2 countries.

Kohei MiyataDepartment of Molecular and Experimental Medicine, The Scripps Research Institute, La Jolla, CA, USA.
Masashi NaitoDepartment of Systems Bio Medicine, Tokyo Medical and Dental University, Tokyo, Japan.
Tomoko MiyataDepartment of Molecular and Experimental Medicine, The Scripps Research Institute, La Jolla, CA, USA.
Sho MokudaDepartment of Molecular and Experimental Medicine, The Scripps Research Institute, La Jolla, CA, USA.
Hiroshi AsaharaDepartment of Molecular and Experimental Medicine, The Scripps Research Institute, La Jolla, CA, USA. asahara.syst@tmd.ac.jp.
Scripps Research Institute · USTokyo Medical and Dental University · JP

Funding

Transcriptional Regulation of ChondrogenesisR01AR050631 · NIAMS · SCRIPPS RESEARCH INSTITUTE, THE · PI ASAHARA, HIROSHI · 2004 to 2021
$5.8M
Transcription factor Mohawk in tendon and ligament degeneration and regenerationR01AR065379 · NIAMS · SCRIPPS RESEARCH INSTITUTE, THE · PI ASAHARA, HIROSHI · 2014 to 2018
$2.1M
NIAMS NIH HHS R01 AR050631NIAMS NIH HHS R01 AR065379
6 · The paper itself

Abstract

In skeletal muscle, DNA methylation contributes to the suppression of gene expression in several biological processes and diseases. A protocol for the detection of methylated cytosine was thus established based on methylation-sensitive enzymes, immunoprecipitation, and bisulfite conversion. DNA methylation analysis, with bisulfite conversion and sequencing, enables the quantification of methylation at each single base position. Here, we describe a basic method of bisulfite sequencing that can be used to analyze local DNA methylation status to confirm genome-wide DNA methylation analysis or correlation of gene expression regulatory mechanisms.

Indexed as

CytosineDNADNA MethylationDNA, Single-StrandedGenome, HumanGenome-Wide Association StudyHumansPrimary Cell CultureRNASatellite Cells, Skeletal MuscleSequence Analysis, DNASulfitesTranscriptomeCytosineDNADNA, Single-Strandedhydrogen sulfiteRNASulfitesBisulfite conversionBisulfite sequencing analysisDNA methylationEpigeneticsMethylcytosine

Identifiers

PMID28842898
PMCPMC6433475
OpenAlexW2745907774

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.