Evidence map›Paper›PMID 28842688›Full record

ArticleScientific reports2017

Light-independent phospholipid scramblase activity of bacteriorhodopsin from Halobacterium salinarum.

Alice Verchère, Wei-Lin Ou, Birgit Ploier, Takefumi Morizumi, Michael A Goren, Peter Bütikofer, Oliver P Ernst, George Khelashvili, Anant K Menon

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
1.2field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 32 citations in OpenAlex.

  1. Article
  2. Article
  3. Opsins are Phospholipid Scramblases in All Domains of Life.bioRxiv : the preprint server for biology · 2025
    Article
  4. Article
  5. Article
  6. Review
  7. Article
  8. Article
  9. Article
  10. Review
  11. Review
  12. Article
  13. Article
  14. Article
  15. Light-Driven ATP Regeneration in Diblock/Grafted Hybrid Vesicles.Chembiochem : a European journal of chemical biology · 2020
    Article
  16. Article
  17. Article
  18. Microscopic view of lipids and their diverse biological functions.Current opinion in structural biology · 2018
    Review
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 3 countries.

Alice VerchèreDepartment of Biochemistry, Weill Cornell Medical College, 1300 York Avenue, New York, New York, 10065, USA.
Wei-Lin OuDepartment of Biochemistry, University of Toronto, 1 Kings College Circle, Toronto, Ontario, Canada, M5S 1A8.
Birgit PloierDepartment of Biochemistry, Weill Cornell Medical College, 1300 York Avenue, New York, New York, 10065, USA.
Takefumi MorizumiDepartment of Biochemistry, University of Toronto, 1 Kings College Circle, Toronto, Ontario, Canada, M5S 1A8.
Michael A GorenDepartment of Biochemistry, Weill Cornell Medical College, 1300 York Avenue, New York, New York, 10065, USA.
Peter BütikoferInstitute of Biochemistry and Molecular Medicine, University of Bern, 3012, Bern, Switzerland.
Oliver P ErnstDepartment of Biochemistry, University of Toronto, 1 Kings College Circle, Toronto, Ontario, Canada, M5S 1A8.ORCID 0000-0002-8863-9444
George KhelashviliDepartment of Physiology and Biophysics, and Institute for Computational Biomedicine, Weill Cornell Medical College, 1300 York Avenue, New York, New York, 10065, USA.
Anant K MenonDepartment of Biochemistry, Weill Cornell Medical College, 1300 York Avenue, New York, New York, 10065, USA. akm2003@med.cornell.edu.ORCID 0000-0001-6924-2698
Cornell University · USUniversity of Toronto · CAUniversity of Bern · CH

Funding

ER glycolipid flippases and congenital disorders of glycosylationR21NS093457 · NINDS · WEILL MEDICAL COLL OF CORNELL UNIV · PI GRAUMANN, JOHANNES, MENON, ANANT K · 2015 to 2016
$466k
Rhodopsin-mediated phospholipid flippingR21EY024207 · NEI · WEILL MEDICAL COLL OF CORNELL UNIV · PI MENON, ANANT K · 2014 to 2015
$462k
NEI NIH HHS R21 EY024207NINDS NIH HHS R21 NS093457
6 · The paper itself

Abstract

The retinylidene protein bacteriorhodopsin (BR) is a heptahelical light-dependent proton pump found in the purple membrane of the archaeon Halobacterium salinarum. We now show that when reconstituted into large unilamellar vesicles, purified BR trimers exhibit light-independent lipid scramblase activity, thereby facilitating transbilayer exchange of phospholipids between the leaflets of the vesicle membrane at a rate >10,000 per trimer per second. This activity is comparable to that of recently described scramblases including bovine rhodopsin and fungal TMEM16 proteins. Specificity tests reveal that BR scrambles fluorescent analogues of common phospholipids but does not transport a glycosylated diphosphate isoprenoid lipid. In silico analyses suggest that membrane-exposed polar residues in transmembrane helices 1 and 2 of BR may provide the molecular basis for lipid translocation by coordinating the polar head-groups of transiting phospholipids. Consistent with this possibility, extensive coarse-grained molecular dynamics simulations of a BR trimer in an explicit phospholipid membrane revealed water penetration along transmembrane helix 1 with the cooperation of a polar residue (Y147 in transmembrane helix 5) in the adjacent protomer. These results suggest that the lipid translocation pathway may lie at or near the interface of the protomers of a BR trimer.

Indexed as

LightBacteriorhodopsinsHalobacterium salinarumModels, MolecularPhospholipidsPhospholipid Transfer ProteinsProtein ConformationRecombinant ProteinsStructure-Activity RelationshipBacteriorhodopsinsPhospholipidsPhospholipid Transfer ProteinsRecombinant Proteins

Identifiers

PMID28842688
PMCPMC5572738
OpenAlexW2748117831

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.