ArticleScientific reports2017
Small RNA profiles from Panax notoginseng roots differing in sizes reveal correlation between miR156 abundances and root biomass levels.
Article in Scientific reports, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.
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Who cites it
13 citing papers in PubMed.
- An organ-specific transcriptome atlas of Curcuma wenyujin: MicroRNAs, phasiRNAs, and metabolic pathways.The plant genome · 2025Article
- Review
- Phased secondary small interfering RNAs inNAR genomics and bioinformatics · 2023Article
- From single- to multi-omics: future research trends in medicinal plants.Briefings in bioinformatics · 2023Article
- Genome-wide analysis and identification of microRNAs inFrontiers in plant science · 2023Article
- MicroRNAs in Medicinal Plants.International journal of molecular sciences · 2022Review
- Expression Profiles and Characteristics of Apple lncRNAs in Roots, Phloem, Leaves, Flowers, and Fruit.International journal of molecular sciences · 2022Article
- Increasing Expression ofFrontiers in plant science · 2022Article
- Genome and transcriptome analysis to understand the role diversification of cytochrome P450 gene under excess nitrogen treatment.BMC plant biology · 2021Article
- Ginsenosides inActa pharmaceutica Sinica. B · 2021Review
- Till 2018: a survey of biomolecular sequences in genusJournal of ginseng research · 2020Review
- Analysis of microRNAs, phased small interfering RNAs and their potential targets in Rosarugosa Thunb.BMC genomics · 2019Article
- Genome-wide identification and comprehensive analysis of microRNAs and phased small interfering RNAs in watermelon.BMC genomics · 2018Article
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11 authors.
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Abstract
Plant genomes encode several classes of small regulatory RNAs (sRNAs) that play critical roles in both development and stress responses. Panax notoginseng (Burk.) F.H. Chen (P. notoginseng) is an important traditional Chinese herbal medicinal plant species for its haemostatic effects. Therefore, the root yield of P. notoginseng is a major economically important trait since the roots of P. notoginseng are the parts used to produce medicine. To identify sRNAs that are critical for the root biomass of P. notoginseng, we performed a comprehensive study of miRNA transcriptomes from P. notoginseng roots of different biomasses. We identified 675 conserved miRNAs, of which 180 pre-miRNAs are also identified, and three TAS3 loci in P. notoginseng. By using degradome sequencing, we identified 79 conserved miRNA:target or tasiRNA:target interactions, of which eight were further confirmed with the RLM 5'-RACE experiments. More importantly, our results revealed that a member of miR156 family and one of its SPL target genes have inverse expression levels, which is tightly correlated with greater root biomass contents. These results not only contributes to overall understanding of post-transcriptional gene regulation in roots of P. notoginseng but also could serve as markers for breeding P. notoginseng with greater root yield.
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