Evidence map›Paper›PMID 28842561›Full record

ArticleNature communications2017

Construction and in vivo assembly of a catalytically proficient and hyperthermostable de novo enzyme.

Daniel W Watkins, Jonathan M X Jenkins, Katie J Grayson, Nicola Wood, Jack W Steventon, Kristian K Le Vay, Matthew I Goodwin, Anna S Mullen, Henry J Bailey, Matthew P Crump and 6 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 44 papers.

0numbers the graph read from it
0cells of the map it votes in
44citing papers in PubMed
4.1field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

44 citing papers in PubMed, 113 citations in OpenAlex.

  1. Article
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  13. Acid-resistant enzymes: the acquisition strategies and applications.Applied microbiology and biotechnology · 2023
    Review
  14. An expandable, modular de novo protein platform for precision redox engineering.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  15. Article
  16. Article
  17. Review
  18. Article
  19. Tailorable Tetrahelical Bundles as a Toolkit for Redox Studies.The journal of physical chemistry. B · 2022
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 2 institutions in 1 country.

Daniel W WatkinsSchool of Biochemistry, University of Bristol, University Walk, Bristol, BS8 1TD, UK.
Jonathan M X JenkinsSchool of Biochemistry, University of Bristol, University Walk, Bristol, BS8 1TD, UK.
Katie J GraysonSchool of Biochemistry, University of Bristol, University Walk, Bristol, BS8 1TD, UK.ORCID http://orcid.org/0000-0003-3764-6406
Nicola WoodSchool of Biochemistry, University of Bristol, University Walk, Bristol, BS8 1TD, UK.
Jack W SteventonSchool of Biochemistry, University of Bristol, University Walk, Bristol, BS8 1TD, UK.
Kristian K Le VaySchool of Biochemistry, University of Bristol, University Walk, Bristol, BS8 1TD, UK.ORCID http://orcid.org/0000-0003-2455-8706
Matthew I GoodwinBrisSynBio Synthetic Biology Research Centre, Life Sciences Building, University of Bristol, Tyndall Avenue, Bristol, BS8 1TQ, UK.ORCID http://orcid.org/0000-0001-9655-6465
Anna S MullenHenry Wellcome Unit of Biological EPR, School of Chemistry, University of East Anglia, Norwich, NR4 7TJ, UK.
Henry J BaileySchool of Biochemistry, University of Bristol, University Walk, Bristol, BS8 1TD, UK.
Matthew P CrumpBrisSynBio Synthetic Biology Research Centre, Life Sciences Building, University of Bristol, Tyndall Avenue, Bristol, BS8 1TQ, UK.ORCID http://orcid.org/0000-0002-7868-5818
Fraser MacMillanHenry Wellcome Unit of Biological EPR, School of Chemistry, University of East Anglia, Norwich, NR4 7TJ, UK.
Adrian J MulhollandBrisSynBio Synthetic Biology Research Centre, Life Sciences Building, University of Bristol, Tyndall Avenue, Bristol, BS8 1TQ, UK.
Gus CameronSchool of Biochemistry, University of Bristol, University Walk, Bristol, BS8 1TD, UK.
Richard B SessionsSchool of Biochemistry, University of Bristol, University Walk, Bristol, BS8 1TD, UK.
Stephen MannBrisSynBio Synthetic Biology Research Centre, Life Sciences Building, University of Bristol, Tyndall Avenue, Bristol, BS8 1TQ, UK.
J L Ross AndersonSchool of Biochemistry, University of Bristol, University Walk, Bristol, BS8 1TD, UK. ross.anderson@bristol.ac.uk.
University of Bristol · GBUniversity of East Anglia · GB

Funding

Biotechnology and Biological Sciences Research Council BB/L01386X/1
6 · The paper itself

Abstract

Although catalytic mechanisms in natural enzymes are well understood, achieving the diverse palette of reaction chemistries in re-engineered native proteins has proved challenging. Wholesale modification of natural enzymes is potentially compromised by their intrinsic complexity, which often obscures the underlying principles governing biocatalytic efficiency. The maquette approach can circumvent this complexity by combining a robust de novo designed chassis with a design process that avoids atomistic mimicry of natural proteins. Here, we apply this method to the construction of a highly efficient, promiscuous, and thermostable artificial enzyme that catalyzes a diverse array of substrate oxidations coupled to the reduction of H

Indexed as

Protein EngineeringBinding SitesKineticsModels, MolecularNuclear Magnetic Resonance, BiomolecularPeroxidaseSubstrate SpecificityPeroxidase

Identifiers

PMID28842561
PMCPMC5572459
OpenAlexW2747381152

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.