Evidence map›Paper›PMID 28841287›Full record

ArticleACS nano2017

Picomolar Fingerprinting of Nucleic Acid Nanoparticles Using Solid-State Nanopores.

Mohammad Amin Alibakhshi, Justin R Halman, James Wilson, Aleksei Aksimentiev, Kirill A Afonin, Meni Wanunu

Abstract read
In one paragraph

Article in ACS nano, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers.

0numbers the graph read from it
0cells of the map it votes in
28citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

28 citing papers in PubMed.

  1. Review
  2. Article
  3. Review
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Review
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Review
  17. Article
  18. Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Mohammad Amin Alibakhshi
Justin R Halman
James WilsonDepartment of Physics, University of Illinois at Urbana-Champaign , Urbana, Illinois 61801, United States.
Aleksei AksimentievDepartment of Physics, University of Illinois at Urbana-Champaign , Urbana, Illinois 61801, United States.ORCID 0000-0002-6042-8442
Kirill A Afonin

Funding

Plasmonic nanopores for trapping, controlled motion and sequencing of DNAR01HG007406 · NHGRI · UNIVERSITY OF ILLINOIS AT URBANA-CHAMPAIGN · PI AKSIMENTIEV, ALEKSEI · 2013 to 2016
$2.4M
Direct picogram DNA and RNA sequencing using nanopore Zero-mode waveguidesR01HG009186 · NHGRI · NORTHEASTERN UNIVERSITY · PI WANUNU, MENI · 2016 to 2019
$2.3M
Nanopore single-molecule dielectrophoresis and biomedical detectionR01GM114204 · NIGMS · UNIVERSITY OF MISSOURI-COLUMBIA · PI GU, LI-QUN (ANDREW) · 2015 to 2017
$887k
NHGRI NIH HHS R01 HG007406NHGRI NIH HHS R01 HG009186NIGMS NIH HHS R01 GM114204
6 · The paper itself

Abstract

Nucleic acid nanoparticles (NANPs) are an emerging class of programmable structures with tunable shape and function. Their promise as tools for fundamental biophysics studies, molecular sensing, and therapeutic applications necessitates methods for their detection and characterization at the single-particle level. In this work, we study electrophoretic transport of individual ring-shaped and cube-shaped NANPs through solid-state nanopores. In the optimal nanopore size range, the particles must deform to pass through, which considerably increases their residence time within the pore. Such anomalously long residence times permit detection of picomolar amounts of NANPs when nanopore measurements are carried out at a high transmembrane bias. In the case of a NANP mixture, the type of individual particle passing through nanopores can be efficiently determined from analysis of a single electrical pulse. Molecular dynamics simulations provide insight into the mechanical barrier to transport of the NANPs and corroborate the difference in the signal amplitudes observed for the two types of particles. Our study serves as a basis for label-free analysis of soft programmable-shape nanoparticles.

Indexed as

NanoporesDNAMolecular Dynamics SimulationNanoparticlesParticle SizeRNADNARNADNA cubenanopore sensingnucleic acid nanoparticlesRNA and DNA nanotechnologyRNA ring

Identifiers

PMID28841287
PMCPMC5959297

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.