Evidence map›Paper›PMID 28841266›Full record

ArticleHuman mutation2017

Functional and molecular studies in primary carnitine deficiency.

Marta Frigeni, Bijina Balakrishnan, Xue Yin, Fernanda R O Calderon, Rong Mao, Marzia Pasquali, Nicola Longo

Open access · greenAbstract readComparative Study
In one paragraph

Article in Human mutation, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 46 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
46citing papers in PubMed, 2 pooled it
4.9field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

46 citing papers in PubMed, 2 syntheses or guidelines pooled it, 77 citations in OpenAlex.

  1. Pooled it
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  6. Pathogenic Analysis of TwoInternational journal of neonatal screening · 2026
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Marta FrigeniDivision of Medical Genetics/Pediatrics, University of Utah, Salt Lake City, Utah.
Bijina BalakrishnanDivision of Medical Genetics/Pediatrics, University of Utah, Salt Lake City, Utah.
Xue YinDivision of Medical Genetics/Pediatrics, University of Utah, Salt Lake City, Utah.
Fernanda R O CalderonARUP Institute for Clinical and Experimental Pathology®, ARUP Laboratories, Salt Lake City, Utah.
Rong MaoARUP Institute for Clinical and Experimental Pathology®, ARUP Laboratories, Salt Lake City, Utah.
Marzia PasqualiDivision of Medical Genetics/Pediatrics, University of Utah, Salt Lake City, Utah.
Nicola LongoDivision of Medical Genetics/Pediatrics, University of Utah, Salt Lake City, Utah.ORCID 0000-0002-3677-1216
University of Utah · US

Funding

THE CARNITINE TRANSPORTER IN HUMAN DISEASER01DK053824 · NIDDK · UNIVERSITY OF UTAH · PI LONGO, NICOLA · 2000 to 2010
$2.3M
NIDDK NIH HHS R01 DK053824
6 · The paper itself

Abstract

Primary carnitine deficiency is caused by a defect in the OCTN2 carnitine transporter encoded by the SLC22A5 gene. It can cause hypoketotic hypoglycemia or cardiomyopathy in children, and sudden death in children and adults. Fibroblasts from affected patients have reduced carnitine transport. We evaluated carnitine transport in fibroblasts from 358 subjects referred for possible carnitine deficiency. Carnitine transport was reduced to 20% or less of normal in fibroblasts of 140 out of 358 subjects. Sequencing of the 10 exons and flanking regions of the SLC22A5 gene in 95 out of 140 subjects identified causative variants in 84% of the alleles. The missense variants identified in our patients and others previously reported (n = 92) were expressed in CHO cells. Carnitine transport was impaired by 73 out of 92 variants expressed. Prediction algorithms (Polyphen-2, SIFT) correctly predicted the functional effects of expressed variants in about 80% of cases. These results indicate that mutations in the coding region of the SLC22A5 gene cannot be identified in about 16% of the alleles causing primary carnitine deficiency. Prediction algorithms failed to determine the functional effects of amino acid substitutions in this transmembrane protein in about 20% of cases. Therefore, functional studies in fibroblasts remain the best strategy to confirm or exclude a diagnosis of primary carnitine deficiency.

Indexed as

Genetic VariationAmino Acid SubstitutionAnimalsBiological TransportCardiomyopathiesCarnitineCHO CellsCricetinaeCricetulusDNA Mutational AnalysisExonsFibroblastsGene FrequencyHumansHyperammonemiaHypoglycemiaCarnitineSLC22A5 protein, humanSolute Carrier Family 22 Member 5carnitine deficiencycarnitine transportcarnitine uptake defectfatty acid oxidationmutationsnewborn screeningOCTN2SLC22A5

Identifiers

PMID28841266
PMCPMC5665702
OpenAlexW2746208777

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.