Evidence map›Paper›PMID 28840447›Full record

ArticlePlant molecular biology2017

Genome-wide analysis of GDSL-type esterases/lipases in Arabidopsis.

Chia-Ping Lai, Li-Min Huang, Long-Fang O Chen, Ming-Tsair Chan, Jei-Fu Shaw

Abstract read
PubMed Publisher
In one paragraph

Article in Plant molecular biology, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 81 papers.

0numbers the graph read from it
0cells of the map it votes in
81citing papers in PubMed
6.6field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

81 citing papers in PubMed, 153 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Genome-Wide Identification of the GELP Family inInternational journal of molecular sciences · 2026
    Article
  5. Article
  6. Review
  7. Article
  8. Review
  9. First EST-SSRs ofPlants (Basel, Switzerland) · 2025
    Article
  10. Article
  11. Article
  12. Article
  13. The Alpha/Beta-Hydrolase Fold Superfamily inInternational journal of molecular sciences · 2025
    Article
  14. Article
  15. Article
  16. Integrating targeted genetic markers to genotyping-by-sequencing for an ultimate genotyping tool.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2024
    Article
  17. Comparative omics-based characterization, phylogeny and melatonin-mediated expression analyses of GDSL genes in pitaya (Physiology and molecular biology of plants : an international journal of functional plant biology · 2024
    Article
  18. Article
  19. Article
  20. Evaluation of the Structure-Function Relationship of SGNH Lipase fromInternational journal of molecular sciences · 2024
    Article

21 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 1 country.

Chia-Ping LaiDepartment of Food and Beverage Management, Far East University, Tainan, Taiwan, Republic of China.
Li-Min HuangInstitute of Biotechnology, National Cheng Kung University, Tainan, Taiwan, Republic of China.
Long-Fang O ChenInstitute of Biotechnology, National Cheng Kung University, Tainan, Taiwan, Republic of China.
Ming-Tsair ChanInstitute of Biotechnology, National Cheng Kung University, Tainan, Taiwan, Republic of China.
Jei-Fu ShawInstitute of Biotechnology, National Cheng Kung University, Tainan, Taiwan, Republic of China. shawjf@isu.edu.tw.
National Cheng Kung University · TWFar East University · TWI-Shou University · TW

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

key messageIn this present study, we introduce a fundamental framework and provide information regarding the possible roles of GDSL-type esterase/lipase gene family in Arabidopsis. GDSL-type esterases/lipases are hydrolytic enzymes with multifunctional properties such as broad substrate specificity, regiospecificity, and stereoselectivity. In this study, we identified 105 GDSL-type esterase/lipase genes in Arabidopsis thaliana by conducting a comprehensive computational analysis. Expression studies indicated that GDSL-type lipase proteins showed varied expression patterns. Phylogenetic tree analysis indicated that AtGELP (Arabidopsis thaliana GDSL-type esterase/lipase protein) gene family was divided into four clades. The phylogenetic analysis, combined with protein motif architectures, and expression profiling were used to predict the roles AtGELP genes. To investigate the physical roles of the AtGELP gene family, we successfully screened 88 AtGELP T-DNA knockout lines for 54 AtGELP genes from 199 putative SALK T-DNA mutants. Transgenic plants of AtGELP genes were used to elucidate the phenotypic characteristics in various developmental stages or stress conditions. Our results suggest that the AtGELP genes have diverse physical functions such as affecting the germination rate and early growth of seedlings subjected to high concentrations of glucose, or being involved in biotic stress responses.

Indexed as

Genome, PlantArabidopsisChromosomes, PlantDNA, BacterialEsterasesExpressed Sequence TagsGene Expression ProfilingGene Expression Regulation, PlantGene Knockout TechniquesGenes, PlantLipaseMutagenesis, InsertionalOligonucleotide Array Sequence AnalysisPhenotypePhylogenySegmental Duplications, GenomicDNA, BacterialEsterasesLipaseT-DNAArabidopsisEsteraseGDSLGenome-wide analysisLipase

Identifiers

PMID28840447
OpenAlexW2745613910

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.