Evidence map›Paper›PMID 28839281›Full record

ArticleScientific reports2017

Fungal Hybrid B heme peroxidases - unique fusions of a heme peroxidase domain with a carbohydrate-binding domain.

Marcel Zámocký, Štefan Janeček, Christian Obinger

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
3.5field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 18 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Article
  6. Hybrid Heme Peroxidases from Rice Blast FungusAntioxidants (Basel, Switzerland) · 2020
    Article
  7. Oxidoreductases and Reactive Oxygen Species in Conversion of Lignocellulosic Biomass.Microbiology and molecular biology reviews : MMBR · 2018
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 3 institutions in 2 countries.

Marcel ZámockýDepartment of Chemistry, Division of Biochemistry, University of Natural Resources and Life Sciences (BOKU), A-1190, Vienna, Austria. marcel.zamocky@boku.ac.at.ORCID 0000-0002-2443-2823
Štefan JanečekInstitute of Molecular Biology, Slovak Academy of Sciences, SK-84551, Bratislava, Slovakia.ORCID 0000-0003-1530-9855
Christian ObingerDepartment of Chemistry, Division of Biochemistry, University of Natural Resources and Life Sciences (BOKU), A-1190, Vienna, Austria.ORCID 0000-0002-7133-3430
BOKU University · ATInstitute of Chemistry of the Slovak Academy of Sciences · SKSlovak Academy of Sciences · SK

Funding

Austrian Science Fund FWF P 27474
6 · The paper itself

Abstract

Heme peroxidases, essential peroxide converting oxidoreductases are divided into four independently evolved superfamilies. Within the largest one - the peroxidase-catalase superfamily - two hybrid lineages were described recently. Whereas Hybrid A heme peroxidases represent intermediate enzymes between ascorbate peroxidases and cytochrome c peroxidases, Hybrid B heme peroxidases are unique fusion proteins comprised of a conserved N-terminal heme peroxidase domain and a C-terminal domain of various sugar binding motifs. So far these peculiar peroxidases are only found in the kingdom of Fungi. Here we present a phylogenetic reconstruction of the whole superfamily with focus on Hybrid B peroxidases. We analyse the domain assembly and putative structure and function of the newly discovered oligosaccharide binding domains. Two distinct carbohydrate binding modules (CBM21 and CBM34) are shown to occur in phytopathogenic ascomycetous orthologs of Hybrid B heme peroxidases only. Based on multiple sequence alignment and homology modeling the structure-function relationships are discussed with respect to physiological function. A concerted action of peroxide cleavage with specific cell-wall carbohydrate binding can support phytopathogens survival within the plant host.

Indexed as

Protein Interaction Domains and MotifsAmino Acid SequenceCatalaseEvolution, MolecularFungal ProteinsHemeModels, MolecularMolecular ConformationMultigene FamilyPeroxidasePhylogenyRecombinant Fusion ProteinsStructure-Activity RelationshipCatalaseFungal ProteinsHemePeroxidaseRecombinant Fusion Proteins

Identifiers

PMID28839281
PMCPMC5571214
OpenAlexW2747142685

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.