Evidence map›Paper›PMID 28839271›Full record

ArticleScientific reports2017

SmartScope2: Simultaneous Imaging and Reconstruction of Neuronal Morphology.

Brian Long, Zhi Zhou, Ali Cetin, Jonathan Ting, Ryder Gwinn, Bosiljka Tasic, Tanya Daigle, Ed Lein, Hongkui Zeng, Peter Saggau and 2 more

Abstract read
In one paragraph

Article in Scientific reports, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Brian LongAllen Institute for Brain Science, Seattle, WA, 98109, USA.
Zhi ZhouAllen Institute for Brain Science, Seattle, WA, 98109, USA.
Ali CetinAllen Institute for Brain Science, Seattle, WA, 98109, USA.
Jonathan TingAllen Institute for Brain Science, Seattle, WA, 98109, USA.
Ryder GwinnDepartment of Neurosurgery, Swedish Neuroscience Institute, Seattle, WA, 98122, USA.
Bosiljka TasicAllen Institute for Brain Science, Seattle, WA, 98109, USA.ORCID 0000-0002-6861-4506
Tanya DaigleAllen Institute for Brain Science, Seattle, WA, 98109, USA.
Ed LeinAllen Institute for Brain Science, Seattle, WA, 98109, USA.ORCID 0000-0001-9012-6552
Hongkui ZengAllen Institute for Brain Science, Seattle, WA, 98109, USA.
Peter SaggauAllen Institute for Brain Science, Seattle, WA, 98109, USA.
Michael HawrylyczAllen Institute for Brain Science, Seattle, WA, 98109, USA.
Hanchuan PengAllen Institute for Brain Science, Seattle, WA, 98109, USA. hanchuanp@alleninstitute.org.ORCID 0000-0002-3478-3942

Funding

Temporal, cell type- and locus-specific epigenetic control in transgenic miceR01DA036909 · NIDA · ALLEN INSTITUTE · PI TASIC, BOSILJKA · 2013 to 2017
$2.3M
NIDA NIH HHS R01 DA036909
6 · The paper itself

Abstract

Quantitative analysis of neuronal morphology is critical in cell type classification and for deciphering how structure gives rise to function in the brain. Most current approaches to imaging and tracing neuronal 3D morphology are data intensive. We introduce SmartScope2, the first open source, automated neuron reconstruction machine integrating online image analysis with automated multiphoton imaging. SmartScope2 takes advantage of a neuron's sparse morphology to improve imaging speed and reduce image data stored, transferred and analyzed. We show that SmartScope2 is able to produce the complex 3D morphology of human and mouse cortical neurons with six-fold reduction in image data requirements and three times the imaging speed compared to conventional methods.

Indexed as

AnimalsAutomation, LaboratoryCerebral CortexHumansImaging, Three-DimensionalMiceMicroscopy, Fluorescence, MultiphotonNeurons

Identifiers

PMID28839271
PMCPMC5571186

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.