Evidence map›Paper›PMID 28839266›Full record

ArticleScientific reports2017

Neutron crystallography of photoactive yellow protein reveals unusual protonation state of Arg52 in the crystal.

Kento Yonezawa, Nobutaka Shimizu, Kazuo Kurihara, Yoichi Yamazaki, Hironari Kamikubo, Mikio Kataoka

Abstract read
In one paragraph

Article in Scientific reports, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed.

  1. Article
  2. Article
  3. Aspartate or arginine? Validated redox state X-ray structures elucidate mechanistic subtleties of FeJournal of biological inorganic chemistry : JBIC : a publication of the Society of Biological Inorganic Chemistry · 2021
    Review
  4. On the Case of the Misplaced Hydrogens.Chembiochem : a European journal of chemical biology · 2021
    Review
  5. Article
  6. Visualizing the protons in a metalloenzyme electron proton transfer pathway.Proceedings of the National Academy of Sciences of the United States of America · 2020
    Article
  7. Article
  8. Article
  9. The pKProtein science : a publication of the Protein Society · 2019
    Article
  10. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Kento YonezawaGraduate School of Materials Science, Nara Institute of Science and Technology, 8916-5 Takayama, Ikoma, Nara, 630-0192, Japan.
Nobutaka ShimizuInstitute of Materials Structure Science, High Energy Accelerator Research Organization (KEK), 1-1 Oho, Tsukuba, Ibaraki, 305-0801, Japan.
Kazuo KuriharaNational Institutes for Quantum and Radiological Science and Technology (QST), 2-4 Oaza- Shirakata, Tokai, Ibaraki, 319-1106, Japan.
Yoichi YamazakiGraduate School of Materials Science, Nara Institute of Science and Technology, 8916-5 Takayama, Ikoma, Nara, 630-0192, Japan.
Hironari KamikuboGraduate School of Materials Science, Nara Institute of Science and Technology, 8916-5 Takayama, Ikoma, Nara, 630-0192, Japan. kamikubo@ms.naist.jp.
Mikio KataokaGraduate School of Materials Science, Nara Institute of Science and Technology, 8916-5 Takayama, Ikoma, Nara, 630-0192, Japan. m_kataoka@cross.or.jp.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Because of its high pK

Indexed as

Models, MolecularProtein ConformationArginineBacterial ProteinsCrystallography, X-RayHydrogen BondingLightNeutronsPhotoreceptors, MicrobialProtonsArginineBacterial Proteinsphotoactive yellow protein, BacteriaPhotoreceptors, MicrobialProtons

Identifiers

PMID28839266
PMCPMC5570954

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.