Evidence map›Paper›PMID 28839213›Full record

ArticleScientific reports2017

Metabolomic compounds identified in Piriformospora indica-colonized Chinese cabbage roots delineate symbiotic functions of the interaction.

Mo Da-Sang Hua, Rajendran Senthil Kumar, Lie-Fen Shyur, Yuan-Bin Cheng, Zhihong Tian, Ralf Oelmüller, Kai-Wun Yeh

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed
10.1field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed, 65 citations in OpenAlex.

  1. Advanced breeding techniques inPlant signaling & behavior · 2026
    Review
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  5. Article
  6. Article
  7. Food chemistry: X · 2024
    Article
  8. Article
  9. The Root-Colonizing EndophyteInternational journal of molecular sciences · 2023
    Article
  10. Article
  11. Article
  12. Plants (Basel, Switzerland) · 2022
    Review
  13. Review
  14. Article
  15. Frontiers in microbiology · 2022
    Article
  16. EndophyticFrontiers in microbiology · 2022
    Article
  17. Article
  18. Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 5 institutions in 3 countries.

Mo Da-Sang HuaInstitute of Plant Biology, National Taiwan University, 106, Taipei, Taiwan.
Rajendran Senthil KumarInstitute of Plant Biology, National Taiwan University, 106, Taipei, Taiwan.
Lie-Fen ShyurAgricultural Biotechnology Research Centre, Academia Sinica, 106, Taipei, Taiwan.
Yuan-Bin ChengInstitute of Natural Products, Kaohsiung Medical University, 807, Kaohsiung, Taiwan.
Zhihong TianHubei Collaborative Innovation, College of Life Science, Yangtze University, Jingzhou, 434025, Hubei, China.
Ralf OelmüllerInstitute of General Botany and Plant Physiology, Friedrich-Schiller-University Jena, Dornburger Str. 159, D-07743, Jena, Germany. b7oera@uni-jena.de.
Kai-Wun YehInstitute of Plant Biology, National Taiwan University, 106, Taipei, Taiwan. ykwbppp@ntu.edu.tw.
National Taiwan University · TWYangtze University · CNAgricultural Biotechnology Research Center, Academia Sinica · TWFriedrich Schiller University Jena · DEKaohsiung Medical University · TW

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Root colonization by endophytic fungus Piriformospora indica facilitating growth/development and stress tolerance has been demonstrated in various host plants. However, global metabolomic studies are rare. By using high-throughput gas-chromatography-based mass spectrometry, 549 metabolites of 1,126 total compounds observed were identified in colonized and uncolonized Chinese cabbage roots, and hyphae of P. indica. The analyses demonstrate that the host metabolomic compounds and metabolite pathways are globally reprogrammed after symbiosis with P. indica. Especially, γ-amino butyrate (GABA), oxylipin-family compounds, poly-saturated fatty acids, and auxin and its intermediates were highly induced and de novo synthesized in colonized roots. Conversely, nicotinic acid (niacin) and dimethylallylpyrophosphate were strongly decreased. In vivo assays with exogenously applied compounds confirmed that GABA primes plant immunity toward pathogen attack and enhances high salinity and temperature tolerance. Moreover, generation of reactive oxygen/nitrogen species stimulated by nicotinic acid is repressed by P. indica, and causes the feasibility of symbiotic interaction. This global metabolomic analysis and the identification of symbiosis-specific metabolites may help to understand how P. indica confers benefits to the host plant.

Indexed as

MetabolomeBasidiomycotaBrassica rapaEndophytesGas Chromatography-Mass SpectrometryHyphaeMetabolomicsOrganic ChemicalsPlant RootsSymbiosisOrganic Chemicals

Identifiers

PMID28839213
PMCPMC5571224
OpenAlexW2746811993

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.