Evidence map›Paper›PMID 28838067›Full record

ArticleILAR journal2017

Zebrafish Models of Human Disease: Gaining Insight into Human Disease at ZFIN.

Yvonne M Bradford, Sabrina Toro, Sridhar Ramachandran, Leyla Ruzicka, Douglas G Howe, Anne Eagle, Patrick Kalita, Ryan Martin, Sierra A Taylor Moxon, Kevin Schaper and 1 more

Open access · bronzeAbstract read
In one paragraph

Article in ILAR journal, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 75 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
75citing papers in PubMed, 1 pooled it
4.9field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

75 citing papers in PubMed, 1 synthesis or guideline pooled it, 160 citations in OpenAlex.

  1. Pooled it
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  9. Aqueous-stable Mn(II)-MOF nanoparticles with highJournal of materials chemistry. B · 2025
    Article
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  16. Direct male development in chromosomally ZZ zebrafish.Frontiers in cell and developmental biology · 2024
    Article
  17. Article
  18. Review
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15 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 1 institution in 1 country.

Yvonne M BradfordZebrafish Model Organism Database, University of Oregon, Eugene, Oregon.
Sabrina ToroZebrafish Model Organism Database, University of Oregon, Eugene, Oregon.
Sridhar RamachandranZebrafish Model Organism Database, University of Oregon, Eugene, Oregon.
Leyla RuzickaZebrafish Model Organism Database, University of Oregon, Eugene, Oregon.
Douglas G HoweZebrafish Model Organism Database, University of Oregon, Eugene, Oregon.
Anne EagleZebrafish Model Organism Database, University of Oregon, Eugene, Oregon.
Patrick KalitaZebrafish Model Organism Database, University of Oregon, Eugene, Oregon.
Ryan MartinZebrafish Model Organism Database, University of Oregon, Eugene, Oregon.
Sierra A Taylor MoxonZebrafish Model Organism Database, University of Oregon, Eugene, Oregon.
Kevin SchaperZebrafish Model Organism Database, University of Oregon, Eugene, Oregon.
Monte WesterfieldZebrafish Model Organism Database, University of Oregon, Eugene, Oregon.
University of Oregon · US

Funding

ZFIN: The Zebrafish Model Organism DatabaseU41HG002659 · NHGRI · UNIVERSITY OF OREGON · PI HOWE, DOUGLAS GORDON · 2011 to 2020
$30.7M
ZFIN:THE ZEBRAFISH MODEL ORGANISM DATABASEP41HG002659 · NHGRI · UNIVERSITY OF OREGON · PI WESTERFIELD, MONTE · 2003 to 2010
$21.2M
ZFIN: The Zebrafish Model Organism DatabaseU24HG002659 · NHGRI · UNIVERSITY OF OREGON · PI WESTERFIELD, MONTE · 2021 to 2025
$10.8M
NHGRI NIH HHS P41 HG002659NHGRI NIH HHS U24 HG002659NHGRI NIH HHS U41 HG002659
6 · The paper itself

Abstract

The Zebrafish Model Organism Database (ZFIN; https://zfin.org) is the central resource for genetic, genomic, and phenotypic data for zebrafish (Danio rerio) research. ZFIN continuously assesses trends in zebrafish research, adding new data types and providing data repositories and tools that members of the research community can use to navigate data. The many research advantages and flexibility of manipulation of zebrafish have made them an increasingly attractive animal to model and study human disease.To facilitate disease-related research, ZFIN developed support to provide human disease information as well as annotation of zebrafish models of human disease. Human disease term pages at ZFIN provide information about disease names, synonyms, and references to other databases as well as a list of publications reporting studies of human diseases in which zebrafish were used. Zebrafish orthologs of human genes that are implicated in human disease etiology are routinely studied to provide an understanding of the molecular basis of disease. Therefore, a list of human genes involved in the disease with their corresponding zebrafish ortholog is displayed on the disease page, with links to additional information regarding the genes and existing mutations. Studying human disease often requires the use of models that recapitulate some or all of the pathologies observed in human diseases. Access to information regarding existing and published models can be critical, because they provide a tractable way to gain insight into the phenotypic outcomes of the disease. ZFIN annotates zebrafish models of human disease and supports retrieval of these published models by listing zebrafish models on the disease term page as well as by providing search interfaces and data download files to access the data. The improvements ZFIN has made to annotate, display, and search data related to human disease, especially zebrafish models for disease and disease-associated gene information, should be helpful to researchers and clinicians considering the use of zebrafish to study human disease.

Indexed as

Databases, GeneticDisease Models, AnimalAnimalsComputational BiologyData CurationGenetic Association StudiesGenomeGenomicsHumansModels, AnimalMutationZebrafishZebrafish ProteinsZebrafish ProteinsDanio reriodatabasediseasedisease modelstranslational researchzebrafishZFIN

Identifiers

PMID28838067
PMCPMC5886338
OpenAlexW2740051183

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.