Evidence map›Paper›PMID 28837161›Full record

ArticleGenetics in medicine : official journal of the American College of Medical Genetics2018

Biallelic variants in LINGO1 are associated with autosomal recessive intellectual disability, microcephaly, speech and motor delay.

Muhammad Ansar, Saima Riazuddin, Muhammad Tahir Sarwar, Periklis Makrythanasis, Sohail Aziz Paracha, Zafar Iqbal, Jamshed Khan, Muhammad Zaman Assir, Mureed Hussain, Attia Razzaq and 16 more

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Article in Genetics in medicine : official journal of the American College of Medical Genetics, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed, 1 pooled it
2.6field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 1 synthesis or guideline pooled it, 26 citations in OpenAlex.

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  11. A Genocentric Approach to Discovery of Mendelian Disorders.American journal of human genetics · 2019
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

26 authors at 13 institutions in 6 countries.

Muhammad AnsarDepartment of Genetic Medicine and Development, University of Geneva, Geneva, Switzerland.
Saima RiazuddinDepartment of Otorhinolaryngology-Head & Neck Surgery, School of Medicine, University of Maryland, Baltimore, Maryland, USA.
Muhammad Tahir SarwarDepartment of Molecular Biology and Genetics, Institute of Basic Medical Sciences, Khyber Medical University, Peshawar, Pakistan.
Periklis MakrythanasisDepartment of Genetic Medicine and Development, University of Geneva, Geneva, Switzerland.
Sohail Aziz ParachaDepartment of Molecular Biology and Genetics, Institute of Basic Medical Sciences, Khyber Medical University, Peshawar, Pakistan.
Zafar IqbalDepartment of Human Genetics, Donders Institute for Brain, Cognition and Behaviou, Radboud University Medical Center, Nijmegen, The Netherlands.
Jamshed KhanDepartment of Molecular Biology and Genetics, Institute of Basic Medical Sciences, Khyber Medical University, Peshawar, Pakistan.
Muhammad Zaman AssirCenter for Genetic Diseases, Shaheed Zulfiqar Ali Bhutto Medical University, Pakistan Institute of Medical Sciences, Islamabad, Pakistan.
Mureed HussainDepartment of Otorhinolaryngology-Head & Neck Surgery, School of Medicine, University of Maryland, Baltimore, Maryland, USA.
Attia RazzaqDepartment of Human Genetics, Donders Institute for Brain, Cognition and Behaviou, Radboud University Medical Center, Nijmegen, The Netherlands.
Daniel Lôpo PollaDepartment of Human Genetics, Donders Institute for Brain, Cognition and Behaviou, Radboud University Medical Center, Nijmegen, The Netherlands.
Abid Sohail TajDepartment of Molecular Biology and Genetics, Institute of Basic Medical Sciences, Khyber Medical University, Peshawar, Pakistan.
Asbjørn HolmgrenDepartment of Medical Genetics, Oslo University Hospital and University of Oslo, Oslo, Norway.
Naila BatoolDepartment of Molecular Biology and Genetics, Institute of Basic Medical Sciences, Khyber Medical University, Peshawar, Pakistan.
Doriana MisceoDepartment of Medical Genetics, Oslo University Hospital and University of Oslo, Oslo, Norway.
Justyna IwaszkiewiczSwiss Institute of Bioinformatics, Molecular Modeling Group, Lausanne, Switzerland.
Arjan P M de BrouwerDepartment of Human Genetics, Donders Institute for Brain, Cognition and Behaviou, Radboud University Medical Center, Nijmegen, The Netherlands.
Michel GuipponiDepartment of Genetic Medicine and Development, University of Geneva, Geneva, Switzerland.
Sylviane HanquinetDepartment of Pediatric Radiology, Geneva University Children's Hospital, Geneva, Switzerland.
Vincent ZoeteSwiss Institute of Bioinformatics, Molecular Modeling Group, Lausanne, Switzerland.
Federico A SantoniDepartment of Genetic Medicine and Development, University of Geneva, Geneva, Switzerland.
Eirik FrengenDepartment of Medical Genetics, Oslo University Hospital and University of Oslo, Oslo, Norway.
Jawad AhmedDepartment of Molecular Biology and Genetics, Institute of Basic Medical Sciences, Khyber Medical University, Peshawar, Pakistan.
Sheikh RiazuddinCenter for Genetic Diseases, Shaheed Zulfiqar Ali Bhutto Medical University, Pakistan Institute of Medical Sciences, Islamabad, Pakistan.
Hans van BokhovenDepartment of Human Genetics, Donders Institute for Brain, Cognition and Behaviou, Radboud University Medical Center, Nijmegen, The Netherlands.
Stylianos E AntonarakisDepartment of Genetic Medicine and Development, University of Geneva, Geneva, Switzerland. Stylianos.Antonarakis@unige.ch.
Khyber Medical University · PKUniversity of Geneva · CHRadboud University Medical Center · NLRadboud University Nijmegen · NLSIB Swiss Institute of Bioinformatics · CHUniversity Hospital of Geneva · CHUniversity of Oslo · NOAllama Iqbal Medical College · PKCentre of Excellence in Molecular Biology · PKCoordenação de Aperfeicoamento de Pessoal de Nível Superior · BROslo University Hospital · NOPakistan Institute of Medical Sciences · PKUniversity of Health Sciences Lahore · PK

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

purposeTo elucidate the novel molecular cause in two unrelated consanguineous families with autosomal recessive intellectual disability.

methodsA combination of homozygosity mapping and exome sequencing was used to locate the plausible genetic defect in family F162, while only exome sequencing was followed in the family PKMR65. The protein 3D structure was visualized with the University of California-San Francisco Chimera software.

resultsAll five patients from both families presented with severe intellectual disability, aggressive behavior, and speech and motor delay. Four of the five patients had microcephaly. We identified homozygous missense variants in LINGO1, p.(Arg290His) in family F162 and p.(Tyr288Cys) in family PKMR65. Both variants were predicted to be pathogenic, and segregated with the phenotype in the respective families. Molecular modeling of LINGO1 suggests that both variants interfere with the glycosylation of the protein.

conclusionLINGO1 is a transmembrane receptor, predominantly found in the central nervous system. Published loss-of-function studies in mouse and zebrafish have established a crucial role of LINGO1 in normal neuronal development and central nervous system myelination by negatively regulating oligodendrocyte differentiation and neuronal survival. Taken together, our results indicate that biallelic LINGO1 missense variants cause autosomal recessive intellectual disability in humans.

Indexed as

AllelesChromosome MappingExome SequencingFamilyFemaleGene FrequencyGenotypeHomozygoteHumansIntellectual DisabilityLanguage Development DisordersMaleMembrane ProteinsMicrocephalyMotor ActivityMutation, MissenseLINGO1 protein, humanMembrane ProteinsNerve Tissue Proteins

Identifiers

PMID28837161
OpenAlexW2747965946

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.