Evidence map›Paper›PMID 28837078›Full record

ArticleGenes2017

Whole Genome Sequencing Revealed Mutations in Two Independent Genes as the Underlying Cause of Retinal Degeneration in an Ashkenazi Jewish Pedigree.

Kevin Gustafson, Jacque L Duncan, Pooja Biswas, Angel Soto-Hermida, Hiroko Matsui, David Jakubosky, John Suk, Amalio Telenti, Kelly A Frazer, Radha Ayyagari

Erratum issuedOpen access · goldAbstract read
In one paragraph

Article in Genes, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
0.9field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 19 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Sensing through Non-Sensing Ocular Ion Channels.International journal of molecular sciences · 2020
    Review
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 2 countries.

Kevin GustafsonOphthalmology, University of California, San Francisco, San Francisco, CA 94143-0730, USA. kevingustafson11@gmail.com.
Jacque L DuncanOphthalmology, University of California, San Francisco, San Francisco, CA 94143-0730, USA. jacque.duncan@ucsf.edu.
Pooja BiswasREVA University, Bengaluru, Karnataka 560034, India. pobiswas@ucsd.edu.
Angel Soto-HermidaShiley Eye Institute, University of California, San Diego, La Jolla, CA 92093-0946, USA. ashermida@ucsd.edu.
Hiroko MatsuiBiomedical Sciences Graduate Program, University of California, San Diego, La Jolla, CA 92093, USA. hmatsui@ucsd.edu.
David JakuboskyBiomedical Sciences Graduate Program, University of California, San Diego, La Jolla, CA 92093, USA. djakubos@ucsd.edu.
John SukShiley Eye Institute, University of California, San Diego, La Jolla, CA 92093-0946, USA. jjsuk@ucsd.edu.
Amalio TelentiHuman Longevity, Inc., San Diego, CA 92121, USA. atelenti@humanlongevity.com.
Kelly A FrazerBiomedical Sciences Graduate Program, University of California, San Diego, La Jolla, CA 92093, USA. kafrazer@ucsd.edu.
Radha AyyagariShiley Eye Institute, University of California, San Diego, La Jolla, CA 92093-0946, USA. rayyagari@ucsd.edu.
University of California San Diego · USUniversity of California, San Francisco · USHuman Longevity (United States) · US

Funding

Rapid-Prototyping and Design CoreP30EY002162 · NEI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI LAMBA, DEEPAK ASHOK · 1985 to 2024
$16.8M
Vision BiostatisticsP30EY022589 · NEI · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI LINDA M ZANGWILL · 2012 to 2026
$10.3M
San Diego Biomedical Informatics Education & Research (SABER)T15LM011271 · NLM · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI SHAMIM NEMATI · 2012 to 2026
$9.7M
Molecular Basis of Hereditary Retinal DegenerationsR01EY021237 · NEI · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI AYYAGARI, RADHA · 2011 to 2020
$5.6M
Molecular Mechanisms Underlying Macular DegenerationsR01EY013198 · NEI · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI AYYAGARI, RADHA · 2001 to 2011
$4.0M
NEI NIH HHS P30 EY002162NEI NIH HHS P30 EY022589NEI NIH HHS R01 EY013198NEI NIH HHS R01 EY021237NLM NIH HHS T15 LM011271
6 · The paper itself

Abstract

Retinitis pigmentosa (RP) causes progressive photoreceptor loss resulting from mutations in over 80 genes. This study identified the genetic cause of RP in three members of a non-consanguineous pedigree. Detailed ophthalmic evaluation was performed in the three affected family members. Whole exome sequencing (WES) and whole genome sequencing (WGS) were performed in the three affected and the two unaffected family members and variants were filtered to detect rare, potentially deleterious variants segregating with disease. WES and WGS did not identify potentially pathogenic variants shared by all three affected members. However, WES identified a previously reported homozygous nonsense mutation in

Indexed as

geneticsretinaretinitis pigmentosa

Identifiers

PMID28837078
PMCPMC5615344
OpenAlexW2746732404

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.