Evidence map›Paper›PMID 28835717›Full record

ArticleScientific reports2017

Establishment and genomic characterization of the new chordoma cell line Chor-IN-1.

Roberta Bosotti, Paola Magnaghi, Sebastiano Di Bella, Liviana Cozzi, Carlo Cusi, Fabio Bozzi, Nicola Beltrami, Giovanni Carapezza, Dario Ballinari, Nadia Amboldi and 8 more

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
1.3field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 17 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Frontiers in oncology · 2022
    Article
  6. Article
  7. Article
  8. Article
  9. New Prospects for Molecular Targets for Chordomas.Neurosurgery clinics of North America · 2020
    Review
  10. Fluorescence in situ hybridization (FISH) provides estimates of minute and interstitial BAP1, CDKN2A, and NF2 gene deletions in peritoneal mesothelioma.Modern pathology : an official journal of the United States and Canadian Academy of Pathology, Inc · 2020
    Article
  11. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors at 2 institutions in 1 country.

Roberta BosottiOncology, Nerviano Medical Sciences, Nerviano, (MI), Italy. roberta.bosotti@nervianoms.com.
Paola MagnaghiOncology, Nerviano Medical Sciences, Nerviano, (MI), Italy.
Sebastiano Di BellaOncology, Nerviano Medical Sciences, Nerviano, (MI), Italy.
Liviana CozziOncology, Nerviano Medical Sciences, Nerviano, (MI), Italy.
Carlo CusiOncology, Nerviano Medical Sciences, Nerviano, (MI), Italy.
Fabio BozziFondazione IRCCS Istituto Nazionale dei Tumori, Milan, Italy.
Nicola BeltramiL.C. Laboratori Campisi, Avola (SR), Italy.
Giovanni CarapezzaOncology, Nerviano Medical Sciences, Nerviano, (MI), Italy.
Dario BallinariOncology, Nerviano Medical Sciences, Nerviano, (MI), Italy.
Nadia AmboldiOncology, Nerviano Medical Sciences, Nerviano, (MI), Italy.
Rosita LupiOncology, Nerviano Medical Sciences, Nerviano, (MI), Italy.
Alessio SomaschiniOncology, Nerviano Medical Sciences, Nerviano, (MI), Italy.
Laura RaddrizzaniOncology, Nerviano Medical Sciences, Nerviano, (MI), Italy.
Barbara SalomOncology, Nerviano Medical Sciences, Nerviano, (MI), Italy.
Arturo GalvaniOncology, Nerviano Medical Sciences, Nerviano, (MI), Italy.
Silvia StacchiottiFondazione IRCCS Istituto Nazionale dei Tumori, Milan, Italy.
Elena TamboriniFondazione IRCCS Istituto Nazionale dei Tumori, Milan, Italy.
Antonella IsacchiOncology, Nerviano Medical Sciences, Nerviano, (MI), Italy.
Nerviano Medical Sciences · ITFondazione IRCCS Istituto Nazionale dei Tumori · IT

Funding

DNA SAMPLE ANALYSIS27307C2007 · NIEHS · PI LEHMAN, TERESA · 2007 to 2007
$74k
NIEHS NIH HHS 27307C2007
6 · The paper itself

Abstract

Chordomas are rare, slowly growing tumors with high medical need, arising in the axial skeleton from notochord remnants. The transcription factor "brachyury" represents a distinctive molecular marker and a key oncogenic driver of chordomas. Tyrosine kinase receptors are also expressed, but so far kinase inhibitors have not shown clear clinical efficacy in chordoma patients. The need for effective therapies is extremely high, but the paucity of established chordoma cell lines has limited preclinical research. Here we describe the isolation of the new Chor-IN-1 cell line from a recurrent sacral chordoma and its characterization as compared to other chordoma cell lines. Chor-IN-1 displays genomic identity to the tumor of origin and has morphological features, growth characteristics and chromosomal abnormalities typical of chordoma, with expression of brachyury and other relevant biomarkers. Chor-IN-1 gene variants, copy number alterations and kinome gene expression were analyzed in comparison to other four chordoma cell lines, generating large scale DNA and mRNA genomic data that can be exploited for the identification of novel pharmacological targets and candidate predictive biomarkers of drug sensitivity in chordoma. The establishment of this new, well characterized chordoma cell line provides a useful tool for the identification of drugs active in chordoma.

Indexed as

GenomicsBiopsyCell Line, TumorChordomaChromosome AberrationsDNA Copy Number VariationsGene Expression Regulation, NeoplasticHumansImmunohistochemistryKaryotypeMaleMiddle Aged

Identifiers

PMID28835717
PMCPMC5569021
OpenAlexW2745714473

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.