ArticleBMC genomics2017
High-density 80 K SNP array is a powerful tool for genotyping G. hirsutum accessions and genome analysis.
Article in BMC genomics, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 62 papers.
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Who cites it
62 citing papers in PubMed.
- MianxinNo.1: a modern cultivar genome-informed SNP array based on cGPS technology for genomics-assisted breeding in cotton.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2026Article
- Evolution and Expression Analysis of PAO Gene Family in Cotton: Focusing on Fiber Development and Stress Response.Plants (Basel, Switzerland) · 2026Article
- A genome-wide association study to elucidate the genetic basis of the cottonseed protein content in Upland cotton (Breeding science · 2026Article
- Genetic Diversity Analysis of 96Genes · 2026Article
- Genetic diversity and population structure analysis of cotton (Gossypium hirsutum L.) genotypes using DArTseq technology.BMC genomics · 2026Article
- Article
- Detection of QTLs and QTL-environment interactions for fruit branch number in Upland cotton (Gossypium hirsutum L.) using a restricted two-stage multi-locus genome-wide association study.BMC plant biology · 2026Article
- Cotton genetic mapping for plant biotechnology: from markers to graph pan-genomes and sustainable breeding.Frontiers in plant science · 2026Review
- Development of a Liquid-Phased Probe Array for Upland Cotton and Its Application in Cultivar Identification.Genes · 2025Article
- Development and validation of a high-density 'Amahysnp' genotyping array in grain amaranth (Amaranthus hypochondriacus).BMC plant biology · 2025Article
- The National Plant Germplasm System cotton collection-a review of germplasm resources, phenotypic characterization, and genomic variation.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2025Review
- Evaluation of Salt-Tolerant Germplasms and Identification of Salt Tolerance-Related Proteins in Upland Cotton at the Seedling Stage.International journal of molecular sciences · 2025Article
- Salt tolerance characterization and genome-wide association study ofFrontiers in plant science · 2025Article
- Genetic linkage analysis of stable QTLs in Gossypium hirsutum RIL population revealed function of GhCesA4 in fiber development.Journal of advanced research · 2024Article
- Genotyping single nucleotide polymorphisms in homologous regions using multiplex kb level amplicon capture sequencing.Molecular genetics and genomics : MGG · 2024Article
- Integrative physiology and transcriptome sequencing reveal differences between G. hirsutum and G. barbadense in response to salt stress and the identification of key salt tolerance genes.BMC plant biology · 2024Article
- Quantitative Trait Locus Mapping for Plant Height and Branch Number in CCRI70 Recombinant Inbred Line Population of Upland Cotton (Gossypium hirsutum).Plants (Basel, Switzerland) · 2024Article
- Development of Novel KASP Markers for Improved Germination in Deep-Sown Direct Seeded Rice.Rice (New York, N.Y.) · 2024Article
- Genetic mapping of quantitative trait loci associated with drought tolerance in chickpea (Cicer arietinum L.).Scientific reports · 2023Article
- Unraveling genomic regions and candidate genes for multiple disease resistance in upland cotton using meta-QTL analysis.Heliyon · 2023Article
2 more citing papers are in PubMed but not listed here.
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Authors and funding
4 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
backgroundHigh-throughput genotyping platforms play important roles in plant genomic studies. Cotton (Gossypium spp.) is the world's important natural textile fiber and oil crop. Upland cotton accounts for more than 90% of the world's cotton production, however, modern upland cotton cultivars have narrow genetic diversity. The amounts of genomic sequencing and re-sequencing data released make it possible to develop a high-quality single nucleotide polymorphism (SNP) array for intraspecific genotyping detection in cotton.
resultsHere we report a high-throughput CottonSNP80K array and its utilization in genotyping detection in different cotton accessions. 82,259 SNP markers were selected from the re-sequencing data of 100 cotton cultivars and used to produce the array on the Illumina Infinium platform. 77,774 SNP loci (94.55%) were successfully synthesized on the array. Of them, 77,252 (99.33%) had call rates of >95% in 352 cotton accessions and 59,502 (76.51%) were polymorphic loci. Application tests using 22 cotton accessions with parent/F
conclusionsWe developed CottonSNP80K array with high polymorphism to distinguish upland cotton accessions. Diverse application tests indicated that the CottonSNP80K play important roles in germplasm genotyping, variety verification, functional genomics studies, and molecular breeding in cotton.
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