Evidence map›Paper›PMID 28832669›Full record

ArticlePloS one2017

TGC repeat expansion in the TCF4 gene increases the risk of Fuchs' endothelial corneal dystrophy in Australian cases.

Abraham Kuot, Alex W Hewitt, Grant R Snibson, Emmanuelle Souzeau, Richard Mills, Jamie E Craig, Kathryn P Burdon, Shiwani Sharma

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
2.6field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 41 citations in OpenAlex.

  1. Molecular Studies ofInternational journal of molecular sciences · 2025
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  6. Observational
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  10. Update on the genetics of corneal endothelial dystrophies.Indian journal of ophthalmology · 2022
    Review
  11. Lower Fractions ofGenes · 2021
    Article
  12. Impact ofVision (Basel, Switzerland) · 2021
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  15. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 1 country.

Abraham KuotDepartment of Ophthalmology, College of Medicine and Public Health, Flinders University, Adelaide, South Australia, Australia.
Alex W HewittCentre for Eye Research Australia, Royal Victorian Eye and Ear Hospital, Melbourne, Victoria, Australia.
Grant R SnibsonCentre for Eye Research Australia, Royal Victorian Eye and Ear Hospital, Melbourne, Victoria, Australia.
Emmanuelle SouzeauDepartment of Ophthalmology, College of Medicine and Public Health, Flinders University, Adelaide, South Australia, Australia.
Richard MillsDepartment of Ophthalmology, College of Medicine and Public Health, Flinders University, Adelaide, South Australia, Australia.
Jamie E CraigDepartment of Ophthalmology, College of Medicine and Public Health, Flinders University, Adelaide, South Australia, Australia.
Kathryn P BurdonDepartment of Ophthalmology, College of Medicine and Public Health, Flinders University, Adelaide, South Australia, Australia.
Shiwani SharmaDepartment of Ophthalmology, College of Medicine and Public Health, Flinders University, Adelaide, South Australia, Australia.ORCID http://orcid.org/0000-0002-0828-025X
Flinders University · AUUniversity of Tasmania · AUCentre for Eye Research Australia · AU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Fuchs' endothelial corneal dystrophy (FECD) is a progressive, vision impairing disease. Common single nucleotide polymorphisms (SNPs) and a trinucleotide repeat polymorphism, thymine-guanine-cytosine (TGC), in the TCF4 gene have been associated with the risk of FECD in some populations. We previously reported association of SNPs in TCF4 with FECD risk in the Australian population. The aim of this study was to determine whether TGC repeat polymorphism in TCF4 is associated with FECD in the Australian population. In 189 unrelated Australian cases with advanced late-onset FECD and 183 matched controls, the TGC repeat polymorphism located in intron 3 of TCF4 was genotyped using a short tandem repeat (STR) assay. The repeat length was verified by direct sequencing in selected homozygous carriers. We found significant association between the expanded TGC repeat (≥ 40 repeats) in TCF4 and advanced FECD (P = 2.58 × 10-22; OR = 15.66 (95% CI: 7.79-31.49)). Genotypic analysis showed that 51% of cases (97) compared to 5% of controls (9) were heterozygous or homozygous for the expanded repeat allele. Furthermore, the repeat expansion showed stronger association than the most significantly associated SNP, rs613872, in TCF4, with the disease in the Australian cohort. This and haplotype analysis of both the polymorphisms suggest that considering both the polymorphisms together rather than either of the two alone would better predict susceptibility to FECD in the Australian population. This is the first study to report association of the TGC trinucleotide repeat expansion in TCF4 with advanced FECD in the Australian population.

Indexed as

Genetic Predisposition to DiseaseTrinucleotide Repeat ExpansionAllelesAustraliaBasic Helix-Loop-Helix Leucine Zipper Transcription FactorsCase-Control StudiesFuchs' Endothelial DystrophyHumansIntronsPolymorphism, GeneticTranscription Factor 4Transcription FactorsBasic Helix-Loop-Helix Leucine Zipper Transcription FactorsTCF4 protein, humanTranscription Factor 4Transcription Factors

Identifiers

PMID28832669
PMCPMC5568371
OpenAlexW2747002281

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.