Evidence map›Paper›PMID 28832133›Full record

ArticleBiochemistry2017

The Mechanism of Regulation of Pantothenate Biosynthesis by the PanD-PanZ·AcCoA Complex Reveals an Additional Mode of Action for the Antimetabolite N-Pentyl Pantothenamide (N5-Pan).

Zoe L P Arnott, Shingo Nozaki, Diana C F Monteiro, Holly E Morgan, Arwen R Pearson, Hironori Niki, Michael E Webb

Abstract read
In one paragraph

Article in Biochemistry, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Review
  6. Homogeneous batch micro-crystallization of proteins from ammonium sulfate.Acta crystallographica. Section D, Structural biology · 2021
    Article
  7. Article
  8. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Zoe L P ArnottAstbury Centre for Structural Molecular Biology and School of Chemistry, University of Leeds , Leeds LS2 9JT, U.K.
Shingo NozakiMicrobial Genetics Laboratory, Genetics Strains Research Center, National Institute of Genetics , 1111 Yata, Mishima, Shizuoka 411-8540, Japan.
Diana C F MonteiroAstbury Centre for Structural Molecular Biology and School of Chemistry, University of Leeds , Leeds LS2 9JT, U.K.
Holly E MorganAstbury Centre for Structural Molecular Biology and School of Chemistry, University of Leeds , Leeds LS2 9JT, U.K.
Arwen R PearsonHamburg Center for Ultrafast Imaging, Institute of Nanostructure and Solid State Physics, University of Hamburg , Luruper Chaussee 149, Hamburg 22761, Germany.
Hironori NikiMicrobial Genetics Laboratory, Genetics Strains Research Center, National Institute of Genetics , 1111 Yata, Mishima, Shizuoka 411-8540, Japan.
Michael E WebbAstbury Centre for Structural Molecular Biology and School of Chemistry, University of Leeds , Leeds LS2 9JT, U.K.ORCID 0000-0003-3574-4686

Funding

Wellcome Trust 094232/Z/10/ZWellcome Trust 096684/Z/11/ZWellcome Trust 105615/Z/14/Z
6 · The paper itself

Abstract

The antimetabolite pentyl pantothenamide has broad spectrum antibiotic activity but exhibits enhanced activity against Escherichia coli. The PanDZ complex has been proposed to regulate the pantothenate biosynthetic pathway in E. coli by limiting the supply of β-alanine in response to coenzyme A concentration. We show that formation of such a complex between activated aspartate decarboxylase (PanD) and PanZ leads to sequestration of the pyruvoyl cofactor as a ketone hydrate and demonstrate that both PanZ overexpression-linked β-alanine auxotrophy and pentyl pantothenamide toxicity are due to formation of this complex. This both demonstrates that the PanDZ complex regulates pantothenate biosynthesis in a cellular context and validates the complex as a target for antibiotic development.

Indexed as

Models, MolecularAcetyl Coenzyme AAmino Acid SubstitutionAnti-Bacterial AgentsAntimetabolitesBinding SitesCalorimetryCarboxy-LyasesCoenzyme ACrystallography, X-RayEnzyme ActivationEscherichia coli K12Escherichia coli ProteinsGene DeletionGlutamate DecarboxylaseKineticsAcetyl Coenzyme AAnti-Bacterial AgentsAntimetabolitesaspartate-alpha-decarboxylaseCarboxy-LyasesCoenzyme AEscherichia coli ProteinsGlutamate DecarboxylaseN-pentylpantothenamidePanD protein, E coliPantothenic AcidPanZ protein, E coliRecombinant Proteins

Identifiers

PMID28832133
PMCPMC5724930

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.