Evidence map›Paper›PMID 28831107›Full record

ArticleScientific reports2017

Unraveling the genetic cause of a consanguineous family with unilateral coloboma and retinoschisis: expanding the phenotypic variability of RAX mutations.

Xiu-Feng Huang, Zhi-Qin Huang, Dan Lin, Ma-Li Dai, Qing-Feng Wang, Zhen-Ji Chen, Zi-Bing Jin, Yuqin Wang

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
2.0field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 15 citations in OpenAlex.

  1. Review
  2. A rare missenseInternational journal of ophthalmology · 2024
    Article
  3. Article
  4. Article
  5. The rax homeobox gene is mutated in the eyeless axolotl, Ambystoma mexicanum.Developmental dynamics : an official publication of the American Association of Anatomists · 2021
    Article
  6. Article
  7. Review
  8. Article
  9. Association ofJournal of ophthalmic & vision research
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 1 institution in 1 country.

Xiu-Feng HuangThe Eye Hospital, Wenzhou Medical University, Wenzhou, 325027, China.
Zhi-Qin HuangThe Eye Hospital, Wenzhou Medical University, Wenzhou, 325027, China.
Dan LinThe Eye Hospital, Wenzhou Medical University, Wenzhou, 325027, China.
Ma-Li DaiThe Eye Hospital, Wenzhou Medical University, Wenzhou, 325027, China.
Qing-Feng WangThe Eye Hospital, Wenzhou Medical University, Wenzhou, 325027, China.
Zhen-Ji ChenThe Eye Hospital, Wenzhou Medical University, Wenzhou, 325027, China.
Zi-Bing JinThe Eye Hospital, Wenzhou Medical University, Wenzhou, 325027, China. jinzb@mail.eye.ac.cn.ORCID 0000-0003-0515-698X
Yuqin WangThe Eye Hospital, Wenzhou Medical University, Wenzhou, 325027, China. yqwang57@163.com.
Wenzhou Medical University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Ocular coloboma is a common eye malformation arising from incomplete closure of the human optic fissure during development. Multiple genetic mutations contribute to the disease process, showing extensive genetic heterogeneity and complexity of coloboma spectrum diseases. In this study, we aimed to unravel the genetic cause of a consanguineous family with unilateral coloboma and retinoschisis. The subjects were recruited and underwent specialized ophthalmologic clinical examination. A combination of whole exome sequencing (WES), homozygosity mapping, and comprehensive variant analyses was performed to uncover the causative mutation. Only one homozygous mutation (c.113 T > C, p.I38T) in RAX gene survived our strict variant filtering process, consistent with an autosomal recessive inheritance pattern. This mutation segregated perfectly in the family and is located in a highly conserved functional domain. Crystal structure modeling indicated that I38T affected the protein structure. We describe a patient from a consanguineous Chinese family with unusual coloboma, proven to harbor a novel RAX mutation (c.113 T > C, p.I38T, homozygous), expanding the phenotypic variability of ocular coloboma and RAX mutations.

Indexed as

ConsanguinityMutationAmino Acid SequenceChromosome MappingColobomaEye ProteinsFemaleGenetic Association StudiesGenetic Predisposition to DiseaseHomeodomain ProteinsHomozygoteHumansMaleModels, MolecularPedigreePhenotypeEye ProteinsHomeodomain ProteinsRAX protein, humanTranscription Factors

Identifiers

PMID28831107
PMCPMC5567291
OpenAlexW2747268714

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.