Evidence map›Paper›PMID 28830452›Full record

ArticleBMC infectious diseases2017

Phylogenetic characterisation of circulating, clinical influenza isolates from Bali, Indonesia: preliminary report from the BaliMEI project.

W Adisasmito, S N Budayanti, D N Aisyah, T Gallo Cassarino, J W Rudge, S J Watson, Z Kozlakidis, G J D Smith, R Coker

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In one paragraph

Article in BMC infectious diseases, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

W AdisasmitoUniversitas Indonesia, Depok, Indonesia.
S N BudayantiUniversitas Udayana, Denpasar, Indonesia.
D N AisyahUniversitas Indonesia, Depok, Indonesia.
T Gallo CassarinoDivision of Infection and Immunity, University College London, 222 Euston Road, London, NW1 2DA, UK.
J W RudgeLondon School of Hygiene and Tropical Medicine, London, UK.
S J WatsonWellcome Trust Sanger Institute, Hinxton, UK.
Z KozlakidisDivision of Infection and Immunity, University College London, 222 Euston Road, London, NW1 2DA, UK. z.kozlakidis@ucl.ac.uk.ORCID 0000-0002-3836-7209
G J D SmithDuke Global Health Institue, Duke University, Durham, NC, USA.
R CokerLondon School of Hygiene and Tropical Medicine, London, UK.

Funding

Departmwnt of Health [UK]Wellcome Trust
6 · The paper itself

Abstract

backgroundHuman influenza represents a major public health concern, especially in south-east Asia where the risk of emergence and spread of novel influenza viruses is particularly high. The BaliMEI study aims to conduct a five year active surveillance and characterisation of influenza viruses in Bali using an extensive network of participating healthcare facilities.

methodsSamples were collected during routine diagnostic treatment in healthcare facilities. In addition to standard clinical and molecular methods for influenza typing, next generation sequencing and subsequent de novo genome assembly were performed to investigate the phylogeny of the collected patient samples.

resultsThe samples collected are characteristic of the seasonally circulating influenza viruses with indications of phylogenetic links to other samples characterised in neighbouring countries during the same time period.

conclusionsThere were some strong phylogenetic links with sequences from samples collected in geographically proximal regions, with some of the samples from the same time-period resulting to small clusters at the tree-end points. However this work, which is the first of its kind completely performed within Indonesia, supports the view that the circulating seasonal influenza in Bali reflects the strains circulating in geographically neighbouring areas as would be expected to occur within a busy regional transit centre.

Indexed as

PhylogenyAdolescentAdultChildChild, PreschoolFemaleHigh-Throughput Nucleotide SequencingHumansIndonesiaInfantInfluenza A virusInfluenza A Virus, H1N1 SubtypeInfluenza, HumanMaleYoung AdultBaliIndonesiaInfluenzaNext generation sequencingPhylogeny

Identifiers

PMID28830452
PMCPMC5568394

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.