Evidence map›Paper›PMID 28830351›Full record

ArticleBMC microbiology2017

Genome sequencing and comparative genomics of enterohemorrhagic Escherichia coli O145:H25 and O145:H28 reveal distinct evolutionary paths and marked variations in traits associated with virulence & colonization.

Sandra C Lorenz, Narjol Gonzalez-Escalona, Michael L Kotewicz, Markus Fischer, Julie A Kase

Abstract read
In one paragraph

Article in BMC microbiology, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed.

  1. Article
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  7. The Prophage and Us-Shiga Toxin Phages Revisited.Pathogens (Basel, Switzerland) · 2023
    Article
  8. Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  9. Article
  10. Article
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  12. Article
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  15. Article
  16. Is Shiga Toxin-ProducingMicroorganisms · 2020
    Article
  17. Article
  18. Article
  19. Pathogenomes of Atypical Non-shigatoxigenicFrontiers in microbiology · 2020
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Sandra C LorenzU.S. Food and Drug Administration, Center for Food Safety and Applied Nutrition, Division of Microbiology, College Park, MD, 20740, USA. sanlorenz@gmx.de.
Narjol Gonzalez-EscalonaU.S. Food and Drug Administration, Center for Food Safety and Applied Nutrition, Division of Microbiology, College Park, MD, 20740, USA.
Michael L KotewiczU.S. Food and Drug Administration, Center for Food Safety and Applied Nutrition, Division of Molecular Biology, Laurel, MD, 20708, USA.
Markus FischerUniversity of Hamburg, Hamburg School of Food Science, Institute of Food Chemistry, 20146, Hamburg, Germany.
Julie A KaseU.S. Food and Drug Administration, Center for Food Safety and Applied Nutrition, Division of Microbiology, College Park, MD, 20740, USA.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundEnterohemorrhagic Escherichia coli (EHEC) O145 are among the top non-O157 serogroups associated with severe human disease worldwide. Two serotypes, O145:H25 and O145:H28 have been isolated from human patients but little information is available regarding the virulence repertoire, origin and evolutionary relatedness of O145:H25. Hence, we sequenced the complete genome of two O145:H25 strains associated with hemolytic uremic syndrome (HUS) and compared the genomes with those of previously sequenced O145:H28 and other EHEC strains.

resultsThe genomes of the two O145:H25 strains were 5.3 Mbp in size; slightly smaller than those of O145:H28 and other EHEC strains. Both strains contained three nearly identical plasmids and several prophages and integrative elements, many of which differed significantly in size, gene content and organization as compared to those present in O145:H28 and other EHECs. Furthermore, notable variations were observed in several fimbrial gene cluster and intimin types possessed by O145:H25 and O145:H28 indicating potential adaptation to distinct areas of host colonization. Comparative genomics further revealed that O145:H25 are genetically more similar to other non-O157 EHEC strains than to O145:H28.

conclusionPhylogenetic analysis accompanied by comparative genomics revealed that O145:H25 and O145:H28 evolved from two separate clonal lineages and that horizontal gene transfer and gene loss played a major role in the divergence of these EHEC serotypes. The data provide further evidence that ruminants might be a possible reservoir for O145:H25 but that they might be impaired in their ability to establish a persistent colonization as compared to other EHEC strains.

Indexed as

Biological EvolutionGenome, BacterialSerogroupAdhesins, BacterialBase SequenceEnterohemorrhagic Escherichia coliEscherichia coliEscherichia coli O157Escherichia coli ProteinsEvolution, MolecularFimbriae, BacterialGenetic VariationGenomic IslandsGenomicsHumansMultigene FamilyAdhesins, BacterialEscherichia coli ProteinsBacterial adaptation & colonizationComparative genomicsEHEC O145:H25Next generation sequencingPhylogenetics

Identifiers

PMID28830351
PMCPMC5567499

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.