Evidence map›Paper›PMID 28830344›Full record

ArticleBMC microbiology2017

Tum1 is involved in the metabolism of sterol esters in Saccharomyces cerevisiae.

Katja Uršič, Mojca Ogrizović, Dušan Kordiš, Klaus Natter, Uroš Petrovič

Open access · goldAbstract read
In one paragraph

Article in BMC microbiology, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
0.2field-weighted citation impact, top 44% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 4 citations in OpenAlex.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 2 countries.

Katja UršičJožef Stefan Institute, Department of Molecular and Biomedical Sciences, Jamova cesta 39, 1000, Ljubljana, Slovenia.
Mojca OgrizovićJožef Stefan Institute, Department of Molecular and Biomedical Sciences, Jamova cesta 39, 1000, Ljubljana, Slovenia.
Dušan KordišJožef Stefan Institute, Department of Molecular and Biomedical Sciences, Jamova cesta 39, 1000, Ljubljana, Slovenia.
Klaus NatterUniversity of Graz, Institute of Biomolecular Sciences, Humboldtstraße 50/EG, 8010, Graz, Austria.
Uroš PetrovičJožef Stefan Institute, Department of Molecular and Biomedical Sciences, Jamova cesta 39, 1000, Ljubljana, Slovenia. uros.petrovic@bf.uni-lj.si.ORCID http://orcid.org/0000-0002-9743-9145
Jožef Stefan Institute · SIUniversity of Graz · ATUniversity of Ljubljana · SI

Funding

Austrian Science Fund FWF I 2263
6 · The paper itself

Abstract

backgroundThe only hitherto known biological role of yeast Saccharomyces cerevisiae Tum1 protein is in the tRNA thiolation pathway. The mammalian homologue of the yeast TUM1 gene, the thiosulfate sulfurtransferase (a.k.a. rhodanese) Tst, has been proposed as an obesity-resistance and antidiabetic gene. To assess the role of Tum1 in cell metabolism and the putative functional connection between lipid metabolism and tRNA modification, we analysed evolutionary conservation of the rhodanese protein superfamily, investigated the role of Tum1 in lipid metabolism, and examined the phenotype of yeast strains expressing the mouse homologue of Tum1, TST.

resultsWe analysed evolutionary relationships in the rhodanese superfamily and established that its members are widespread in bacteria, archaea and in all major eukaryotic groups. We found that the amount of sterol esters was significantly higher in the deletion strain tum1Δ than in the wild-type strain. Expression of the mouse TST protein in the deletion strain did not rescue this phenotype. Moreover, although Tum1 deficiency in the thiolation pathway was complemented by re-introducing TUM1, it was not complemented by the introduction of the mouse homologue Tst. We further showed that the tRNA thiolation pathway is not involved in the regulation of sterol ester content in S. cerevisiae, as overexpression of the tE

conclusionsThe rhodanese superfamily of proteins is widespread in all organisms, and yeast TUM1 is a bona fide orthologue of mammalian Tst thiosulfate sulfurtransferase gene. However, the mouse TST protein cannot functionally replace yeast Tum1 protein, neither in its lipid metabolism-related function, nor in the tRNA thiolation pathway. We show here that Tum1 protein is involved in lipid metabolism by decreasing the sterol ester content in yeast cells, and that this function of Tum1 is not exerted through the tRNA thiolation pathway, but through another, currently unknown pathway.

Indexed as

AnimalsCarrier ProteinsEstersGene DeletionLipid MetabolismLipidsMicePhenotypePhylogenyRNA, TransferSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsSequence AlignmentSterolsThiosulfate SulfurtransferaseVertebratesCarrier ProteinsEstersLipidsRNA, TransferSaccharomyces cerevisiae ProteinsSterolsThiosulfate SulfurtransferaseTum1 protein, S cerevisiaeLipid metabolismtRNA modificationYeast Saccharomyces cerevisiae

Identifiers

PMID28830344
PMCPMC5567475
OpenAlexW2745794432

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.