Evidence map›Paper›PMID 28829576›Full record

ArticleBiochemistry2017

Nuclear Magnetic Resonance Study of RNA Structures at the 3'-End of the Hepatitis C Virus Genome.

Clayton Kranawetter, Samantha Brady, Lizhen Sun, Mark Schroeder, Shi-Jie Chen, Xiao Heng

Open access · greenAbstract readComparative StudyValidation Study
In one paragraph

Article in Biochemistry, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
1.3field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 13 citations in OpenAlex.

  1. Application of NMR to Large RNAs.Journal of molecular biology · 2025
    Review
  2. Article
  3. Article
  4. IsRNA1:Journal of chemical theory and computation · 2021
    Article
  5. Article
  6. Review
  7. Review
  8. Article
  9. Hexahydrated MgBiophysical journal · 2018
    Article
  10. Review
  11. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Clayton KranawetterDepartment of Biochemistry, University of Missouri , Columbia, Missouri 65211, United States.
Samantha BradyDepartment of Biochemistry, University of Missouri , Columbia, Missouri 65211, United States.
Lizhen SunDepartment of Physics, Department of Biochemistry, and Informatics Institute, University of Missouri , Columbia, Missouri 65211, United States.
Mark SchroederDepartment of Biochemistry, University of Missouri , Columbia, Missouri 65211, United States.
Shi-Jie ChenDepartment of Physics, Department of Biochemistry, and Informatics Institute, University of Missouri , Columbia, Missouri 65211, United States.ORCID 0000-0002-8093-7244
Xiao HengDepartment of Biochemistry, University of Missouri , Columbia, Missouri 65211, United States.ORCID 0000-0001-8448-3596
University of Missouri · US

Funding

Statistical Mechanics of RNA FoldingR01GM063732 · NIGMS · UNIVERSITY OF MISSOURI-COLUMBIA · PI CHEN, SHI-JIE · 2003 to 2018
$3.2M
New computational tools for predicting ion effects in RNA structuresR01GM117059 · NIGMS · UNIVERSITY OF MISSOURI-COLUMBIA · PI CHEN, SHI-JIE · 2017 to 2020
$1.2M
NIGMS NIH HHS R01 GM063732NIGMS NIH HHS R01 GM117059
6 · The paper itself

Abstract

The 3'-end of the genomic RNA of the hepatitis C virus (HCV) embeds conserved elements that regulate viral RNA synthesis and protein translation by mechanisms that have yet to be elucidated. Previous studies with oligo-RNA fragments have led to multiple, mutually exclusive secondary structure predictions, indicating that HCV RNA structure may be context-dependent. Here we employed a nuclear magnetic resonance (NMR) approach that involves long-range adenosine interaction detection, coupled with site-specific

Indexed as

3' Untranslated RegionsModels, MolecularBase PairingElectrophoretic Mobility Shift AssayGenome, ViralHepacivirusMagnesiumMonte Carlo MethodNuclear Magnetic Resonance, BiomolecularNucleic Acid ConformationOsmolar ConcentrationRNA StabilityRNA, Viral3' Untranslated RegionsMagnesiumRNA, Viral

Identifiers

PMID28829576
PMCPMC5643200
OpenAlexW2749894989

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.