Evidence map›Paper›PMID 28829438›Full record

ArticleNature biotechnology2017

An atlas of B-cell clonal distribution in the human body.

Wenzhao Meng, Bochao Zhang, Gregory W Schwartz, Aaron M Rosenfeld, Daqiu Ren, Joseph J C Thome, Dustin J Carpenter, Nobuhide Matsuoka, Harvey Lerner, Amy L Friedman and 5 more

Open access · greenAbstract read
In one paragraph

Article in Nature biotechnology, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 115 papers.

0numbers the graph read from it
0cells of the map it votes in
115citing papers in PubMed
13.7field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

115 citing papers in PubMed, 187 citations in OpenAlex.

  1. Trial
  2. Article
  3. Structural promiscuity in the human circulatory IgA1 clonal repertoire.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  4. Article
  5. Review
  6. Article
  7. Explore antibody repertoire in the era of AI.Acta biochimica et biophysica Sinica · 2025
    Article
  8. Article
  9. AnalyzAIRR: A user-friendly guided workflow for AIRR data analysis.Immunoinformatics (Amsterdam, Netherlands) · 2025
    Article
  10. IgMScientific reports · 2025
    Article
  11. Article
  12. The unexpected role of nurse shark pancreas as a secondary lymphoid organ.Journal of immunology (Baltimore, Md. : 1950) · 2025
    Article
  13. Article
  14. Long-term B cell memory emerges at uniform relative rates in the human immune response.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  15. Review
  16. Article
  17. Article
  18. Review
  19. Evaluating methods for B-cell clonal family assignment.bioRxiv : the preprint server for biology · 2024
    Article
  20. Review

55 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 4 institutions in 1 country.

Wenzhao MengDepartment of Pathology and Laboratory Medicine, Perelman School of Medicine, University of Pennsylvania, Philadelphia, Pennsylvania, USA.
Bochao ZhangSchool of Biomedical Engineering, Science and Health Systems, Drexel University, Philadelphia, Pennsylvania, USA.
Gregory W SchwartzSchool of Biomedical Engineering, Science and Health Systems, Drexel University, Philadelphia, Pennsylvania, USA.
Aaron M RosenfeldSchool of Biomedical Engineering, Science and Health Systems, Drexel University, Philadelphia, Pennsylvania, USA.
Daqiu RenDepartment of Pathology and Laboratory Medicine, Perelman School of Medicine, University of Pennsylvania, Philadelphia, Pennsylvania, USA.
Joseph J C ThomeColumbia Center for Translational Immunology, Columbia University Medical Center, New York, New York, USA.
Dustin J CarpenterColumbia Center for Translational Immunology, Columbia University Medical Center, New York, New York, USA.ORCID http://orcid.org/0000-0001-6008-5868
Nobuhide MatsuokaColumbia Center for Translational Immunology, Columbia University Medical Center, New York, New York, USA.
Harvey LernerLiveOnNY, New York, New York, USA.
Amy L FriedmanLiveOnNY, New York, New York, USA.
Tomer GranotColumbia Center for Translational Immunology, Columbia University Medical Center, New York, New York, USA.
Donna L FarberColumbia Center for Translational Immunology, Columbia University Medical Center, New York, New York, USA.
Mark J ShlomchikDepartment of Immunology, University of Pittsburgh, Pittsburgh, Pennsylvania, USA.
Uri HershbergSchool of Biomedical Engineering, Science and Health Systems, Drexel University, Philadelphia, Pennsylvania, USA.
Eline T Luning PrakDepartment of Pathology and Laboratory Medicine, Perelman School of Medicine, University of Pennsylvania, Philadelphia, Pennsylvania, USA.ORCID http://orcid.org/0000-0002-9478-9211
Columbia University Irving Medical Center · USDrexel University · USUniversity of Pennsylvania · USUniversity of Pittsburgh · US

Funding

UNIVERSITY OF PENNSYLVANIA CAN CTR SUPPORT GRANTP30CA016520 · NCI · UNIVERSITY OF PENNSYLVANIA · PI SHELLEY L BERGER · 1985 to 2026
$222.3M
Transcriptomics and Repertoire ProfilingP01AI106697 · NIAID · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI Donna L. Farber · 2013 to 2026
$31.3M
Longevity and turnover of human naive T cells in lymphoid tissueF31AG047003 · NIA · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI THOME, JOSEPH JOHN-CHARLES · 2013 to 2015
$109k
NCI NIH HHS P30 CA016520NIAID NIH HHS P01 AI106697NIA NIH HHS F31 AG047003
6 · The paper itself

Abstract

B-cell responses result in clonal expansion, and can occur in a variety of tissues. To define how B-cell clones are distributed in the body, we sequenced 933,427 B-cell clonal lineages and mapped them to eight different anatomic compartments in six human organ donors. We show that large B-cell clones partition into two broad networks-one spans the blood, bone marrow, spleen and lung, while the other is restricted to tissues within the gastrointestinal (GI) tract (jejunum, ileum and colon). Notably, GI tract clones display extensive sharing of sequence variants among different portions of the tract and have higher frequencies of somatic hypermutation, suggesting extensive and serial rounds of clonal expansion and selection. Our findings provide an anatomic atlas of B-cell clonal lineages, their properties and tissue connections. This resource serves as a foundation for studies of tissue-based immunity, including vaccine responses, infections, autoimmunity and cancer.

Indexed as

AdultB-LymphocytesCell LineageClone CellsFemaleHumansMaleMiddle AgedOrgan SpecificityYoung Adult

Identifiers

PMID28829438
PMCPMC5679700
OpenAlexW2745908856

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.