Evidence map›Paper›PMID 28829016›Full record

ArticleInternational journal of systematic and evolutionary microbiology2017

Polynucleobacter sphagniphilus sp. nov. a planktonic freshwater bacterium isolated from an acidic and humic freshwater habitat.

Martin W Hahn, Gerlinde Karbon, Ulrike Koll, Johanna Schmidt, Elke Lang

Abstract read
In one paragraph

Article in International journal of systematic and evolutionary microbiology, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Martin W HahnResearch Institute for Limnology, University of Innsbruck, Mondseestrasse 9, A-5310 Mondsee, Austria.
Gerlinde KarbonResearch Institute for Limnology, University of Innsbruck, Mondseestrasse 9, A-5310 Mondsee, Austria.
Ulrike KollResearch Institute for Limnology, University of Innsbruck, Mondseestrasse 9, A-5310 Mondsee, Austria.
Johanna SchmidtResearch Institute for Limnology, University of Innsbruck, Mondseestrasse 9, A-5310 Mondsee, Austria.
Elke LangLeibniz-Institut DSMZ - Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH, Inhoffenstraße 7B, D-38124 Braunschweig, Germany.

Funding

Austrian Science Fund FWF I 482
6 · The paper itself

Abstract

Strain MWH-Weng1-1T, isolated from an acidic freshwater habitat located in the Wenger Moor, Austria, was characterized by investigating its phenotypic, chemotaxonomic and genomic traits. Phylogenetic analyses based on 16S rRNA gene sequencing placed the strain in the cryptic species complex PnecC within the genus Polynucleobacter. The strain had a genome of 2.04 Mbp with a G+C content of 45.6 mol%. The major fatty acids of the strain were C16 : 1ω7c, C16 : 0 and C18 : 1ω7c. In order to resolve the systematic position of the strain within the species complex PnecC, concatenated partial sequences of eight housekeeping genes were used for phylogenetic analyses. The obtained trees did not place strain MWH-Weng1-1T close to any of the six previously described species within this cryptic species complex. Pairwise whole genome average nucleotide identity comparisons with genome sequences of strains representing the six previously described species of the subcluster resulted throughout in values <78 %, which clearly suggested that strain MWH-Weng1-1T (DSM 24018T=CIP 111099T) represents a novel species. We propose the name Polynucleobacter sphagniphilus sp. nov. and strain MWH-Weng1-1T as the type strain for this new species.

Indexed as

PhylogenyAcidsAustriaBacterial Typing TechniquesBase CompositionBurkholderiaceaeDNA, BacterialEcosystemFatty AcidsFresh WaterGenes, BacterialPlanktonRNA, Ribosomal, 16SSequence Analysis, DNAAcidsDNA, BacterialFatty AcidsRNA, Ribosomal, 16S

Identifiers

PMID28829016
PMCPMC5654510

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.