Evidence map›Paper›PMID 28827791›Full record

ArticlePLoS neglected tropical diseases2017

Candidate gene polymorphisms study between human African trypanosomiasis clinical phenotypes in Guinea.

Justin Windingoudi Kaboré, Hamidou Ilboudo, Harry Noyes, Oumou Camara, Jacques Kaboré, Mamadou Camara, Mathurin Koffi, Veerle Lejon, Vincent Jamonneau, Annette MacLeod and 6 more

Open access · goldAbstract read
In one paragraph

Article in PLoS neglected tropical diseases, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
2.6field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 27 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 9 institutions in 6 countries.

Justin Windingoudi KaboréCentre International de Recherche-Développement sur l'Elevage en zone Subhumide (CIRDES), Bobo-Dioulasso, Burkina Faso.ORCID http://orcid.org/0000-0002-1865-813X
Hamidou IlboudoCentre International de Recherche-Développement sur l'Elevage en zone Subhumide (CIRDES), Bobo-Dioulasso, Burkina Faso.
Harry NoyesCentre for Genomic Research, University of Liverpool, Liverpool, United Kingdom.
Oumou CamaraProgramme National de Lutte contre la Trypanosomose Humaine Africaine, Conakry, Guinea.
Jacques KaboréCentre International de Recherche-Développement sur l'Elevage en zone Subhumide (CIRDES), Bobo-Dioulasso, Burkina Faso.
Mamadou CamaraProgramme National de Lutte contre la Trypanosomose Humaine Africaine, Conakry, Guinea.
Mathurin KoffiUniversité Jean Lorougnon Guédé (UJLoG), Daloa, Côte d'Ivoire.
Veerle LejonInstitut de Recherche pour le Développement (IRD), Montpellier, France.
Vincent JamonneauInstitut de Recherche pour le Développement (IRD), Montpellier, France.
Annette MacLeodWellcome Trust Centre for Molecular Parasitology, University Place, Glasgow, United Kingdom.
Christiane Hertz-FowlerCentre for Genomic Research, University of Liverpool, Liverpool, United Kingdom.
Adrien Marie Gaston BelemUniversité Nazi Boni (UNB), Bobo-Dioulasso, Burkina Faso.
Enock MatovuCollege of Veterinary Medicine, Animal Resources and Bio-security, Makerere University, Kampala, Uganda.
Bruno BuchetonProgramme National de Lutte contre la Trypanosomose Humaine Africaine, Conakry, Guinea.
Issa SidibeCentre International de Recherche-Développement sur l'Elevage en zone Subhumide (CIRDES), Bobo-Dioulasso, Burkina Faso.
TrypanoGEN Research Group as members of The H3Africa Consortium
Institut de Recherche Agronomique de Guinée · GNNazi Boni University · BFCentre international de recherche-développement sur l'elevage en zone subhumide · BFUniversity of Liverpool · GBInstitut de Recherche pour le Développement · CIInstitut de Recherche pour le Développement · FRMakerere University · UGUniversité Jean Lorougnon Guédé · CIWellcome Centre for Molecular Parasitology · GB

Funding

Wellcome Trust
6 · The paper itself

Abstract

backgroundHuman African trypanosomiasis (HAT), a lethal disease induced by Trypanosoma brucei gambiense, has a range of clinical outcomes in its human host in West Africa: an acute form progressing rapidly to second stage, spontaneous self-cure and individuals able to regulate parasitaemia at very low levels, have all been reported from endemic foci. In order to test if this clinical diversity is influenced by host genetic determinants, the association between candidate gene polymorphisms and HAT outcome was investigated in populations from HAT active foci in Guinea. METHODOLOGY AND

resultsSamples were collected from 425 individuals; comprising of 232 HAT cases, 79 subjects with long lasting positive and specific serology but negative parasitology and 114 endemic controls. Genotypes of 28 SNPs in eight genes passed quality control and were used for an association analysis. IL6 rs1818879 allele A (p = 0.0001, OR = 0.39, CI95 = [0.24-0.63], BONF = 0.0034) was associated with a lower risk of progressing from latent infection to active disease. MIF rs36086171 allele G seemed to be associated with an increased risk (p = 0.0239, OR = 1.65, CI95 = [1.07-2.53], BONF = 0.6697) but did not remain significant after Bonferroni correction. Similarly MIF rs12483859 C allele seems be associated with latent infections (p = 0.0077, OR = 1.86, CI95 = [1.18-2.95], BONF = 0.2157). We confirmed earlier observations that APOL1 G2 allele (DEL) (p = 0.0011, OR = 2.70, CI95 = [1.49-4.91], BONF = 0.0301) is associated with a higher risk and APOL1 G1 polymorphism (p = 0.0005, OR = 0.45, CI95 = [0.29-0.70], BONF = 0.0129) with a lower risk of developing HAT. No associations were found with other candidate genes.

conclusionOur data show that host genes are involved in modulating Trypanosoma brucei gambiense infection outcome in infected individuals from Guinea with IL6 rs1818879 being associated with a lower risk of progressing to active HAT. These results enhance our understanding of host-parasite interactions and, ultimately, may lead to the development of new control tools.

Indexed as

Genetic Predisposition to DiseasePolymorphism, Single NucleotideGenetic Association StudiesGuineaHumansPhenotypeTrypanosoma brucei gambienseTrypanosomiasis, African

Identifiers

PMID28827791
PMCPMC5595334
OpenAlexW2748096092

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.