Evidence map›Paper›PMID 28827773›Full record

ArticleScientific reports2017

Evolutionary shifts in gene expression decoupled from gene duplication across functionally distinct spider silk glands.

Thomas H Clarke, Jessica E Garb, Robert A Haney, R Crystal Chaw, Cheryl Y Hayashi, Nadia A Ayoub

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
1.9field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 40 citations in OpenAlex.

  1. Article
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  7. Article
  8. Complexity of Spider Dragline Silk.Biomacromolecules · 2022
    Review
  9. Article
  10. Article
  11. Critical role of minor eggcase silk component in promoting spidroin chain alignment and strong fiber formation.Proceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  12. Article
  13. Article
  14. Article
  15. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 4 institutions in 1 country.

Thomas H ClarkeDepartment of Biology, Washington and Lee University, Lexington, VA, 24450, USA.
Jessica E GarbDepartment of Biological Sciences, University of Massachusetts Lowell, Lowell, MA, 01854, USA.
Robert A HaneyDepartment of Biological Sciences, University of Massachusetts Lowell, Lowell, MA, 01854, USA.
R Crystal ChawDepartment of Biology, University of California, Riverside, CA, 92521, USA.
Cheryl Y HayashiDepartment of Biology, University of California, Riverside, CA, 92521, USA.
Nadia A AyoubDepartment of Biology, Washington and Lee University, Lexington, VA, 24450, USA. ayoubn@wlu.edu.
University of Massachusetts Lowell · USWashington and Lee University · USOregon Health & Science University · USUniversity of California, Riverside · US

Funding

Discovering Biomedically Significant Spider Venom Toxins with GenomicsR15GM097714 · NIGMS · UNIVERSITY OF MASSACHUSETTS LOWELL · PI GARB, JESSICA ELLEN · 2011 to 2015
$611k
Molecular evolution of latrotoxins: neurotoxins from black widow spider venomF32GM083661 · NIGMS · UNIVERSITY OF ARIZONA · PI GARB, JESSICA · 2007 to 2009
$91k
Convergent Molecular Evolution of Moth and Spider SilksF32GM078875 · NIGMS · UNIVERSITY OF CALIFORNIA RIVERSIDE · PI AYOUB, NADIA A · 2007 to 2009
$85k
NIGMS NIH HHS F32 GM078875NIGMS NIH HHS F32 GM083661NIGMS NIH HHS R15 GM097714
6 · The paper itself

Abstract

Spider silk synthesis is an emerging model for the evolution of tissue-specific gene expression and the role of gene duplication in functional novelty, but its potential has not been fully realized. Accordingly, we quantified transcript (mRNA) abundance in seven silk gland types and three non-silk gland tissues for three cobweb-weaving spider species. Evolutionary analyses based on expression levels of thousands of homologous transcripts and phylogenetic reconstruction of 605 gene families demonstrated conservation of expression for each gland type among species. Despite serial homology of all silk glands, the expression profiles of the glue-forming aggregate glands were divergent from fiber-forming glands. Also surprising was our finding that shifts in gene expression among silk gland types were not necessarily coupled with gene duplication, even though silk-specific genes belong to multi-paralog gene families. Our results challenge widely accepted models of tissue specialization and significantly advance efforts to replicate silk-based high-performance biomaterials.

Indexed as

Gene DuplicationGene ExpressionAnimalsEvolution, MolecularExocrine GlandsGene Expression ProfilingSilkSpidersSilk

Identifiers

PMID28827773
PMCPMC5566633
OpenAlexW2744891254

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.