Evidence map›Paper›PMID 28827760›Full record

ArticleScientific reports2017

Protein structure shapes immunodominance in the CD4 T cell response to yellow fever vaccination.

Maximilian Koblischke, Maria S Mackroth, Julia Schwaiger, Ingrid Fae, Gottfried Fischer, Karin Stiasny, Franz X Heinz, Judith H Aberle

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
3.0field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 21 citations in OpenAlex.

  1. Review
  2. Article
  3. Human T Cell Responses to Flavivirus Vaccines.European journal of immunology · 2025
    Review
  4. Article
  5. Mucosal Vaccination: A Promising Alternative Against Flaviviruses.Frontiers in cellular and infection microbiology · 2022
    Review
  6. Article
  7. Article
  8. Article
  9. Article
  10. Cross-Reactive Immunity Among Flaviviruses.Frontiers in immunology · 2020
    Review
  11. Article
  12. CD4 T cell responses to flaviviruses.Journal of clinical virology : the official publication of the Pan American Society for Clinical Virology · 2018
    Review
  13. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 2 countries.

Maximilian KoblischkeCenter for Virology, Medical University of Vienna, Vienna, Austria.ORCID 0000-0003-1223-4990
Maria S MackrothDepartment of Medicine I, Division of Infectious Diseases and Tropical Medicine, University Medical Center Hamburg-Eppendorf, Hamburg, Germany.
Julia SchwaigerCenter for Virology, Medical University of Vienna, Vienna, Austria.
Ingrid FaeDepartment of Blood Group Serology and Transfusion Medicine, Medical University of Vienna, Vienna, Austria.
Gottfried FischerDepartment of Blood Group Serology and Transfusion Medicine, Medical University of Vienna, Vienna, Austria.
Karin StiasnyCenter for Virology, Medical University of Vienna, Vienna, Austria.ORCID 0000-0002-1902-8674
Franz X HeinzCenter for Virology, Medical University of Vienna, Vienna, Austria.
Judith H AberleCenter for Virology, Medical University of Vienna, Vienna, Austria. judith.aberle@meduniwien.ac.at.ORCID 0000-0003-1197-3935
Medical University of Vienna · ATUniversität Hamburg · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The live attenuated yellow fever (YF) vaccine is a highly effective human vaccine and induces long-term protective neutralizing antibodies directed against the viral envelope protein E. The generation of such antibodies requires the help of CD4 T cells which recognize peptides derived from proteins in virus particles internalized and processed by E-specific B cells. The CD4 T helper cell response is restricted to few immunodominant epitopes, but the mechanisms of their selection are largely unknown. Here, we report that CD4 T cell responses elicited by the YF-17D vaccine are focused to hotspots of two helices of the viral capsid protein and to exposed strands and loops of E. We found that the locations of immunodominant epitopes within three-dimensional protein structures exhibit a high degree of overlap between YF virus and the structurally homologous flavivirus tick-borne encephalitis virus, although amino acid sequence identity of the epitope regions is only 15-45%. The restriction of epitopes to exposed E protein surfaces and their strikingly similar positioning within proteins of distantly related flaviviruses are consistent with a strong influence of protein structure that shapes CD4 T cell responses and provide leads for a rational design of immunogens for vaccination.

Indexed as

Protein ConformationAmino Acid SequenceAntibodies, NeutralizingAntibodies, ViralBinding SitesCD4-Positive T-LymphocytesConserved SequenceEpitope MappingHumansImmunodominant EpitopesModels, MolecularProtein BindingStructure-Activity RelationshipT-Cell Antigen Receptor SpecificityVaccinationVaccines, AttenuatedAntibodies, NeutralizingAntibodies, ViralImmunodominant EpitopesVaccines, AttenuatedViral Envelope ProteinsViral Structural ProteinsYellow Fever Vaccine

Identifiers

PMID28827760
PMCPMC5566484
OpenAlexW2748061607

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.