Evidence map›Paper›PMID 28827376›Full record

ArticleThe Plant cell2017

Architecture and Dynamics of the Jasmonic Acid Gene Regulatory Network.

Richard Hickman, Marcel C Van Verk, Anja J H Van Dijken, Marciel Pereira Mendes, Irene A Vroegop-Vos, Lotte Caarls, Merel Steenbergen, Ivo Van der Nagel, Gert Jan Wesselink, Aleksey Jironkin and 7 more

Open access · greenAbstract read
In one paragraph

Article in The Plant cell, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 148 papers.

0numbers the graph read from it
0cells of the map it votes in
148citing papers in PubMed
23.0field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

148 citing papers in PubMed, 279 citations in OpenAlex.

  1. PLASTID ENVELOPE ION CHANNELS (PEC1/2) link CaProceedings of the National Academy of Sciences of the United States of America · 2026
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  2. Identification of theBiology · 2026
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  3. Article
  4. Defense Responses of Cucumber and Cowpea toPlants (Basel, Switzerland) · 2026
    Article
  5. Review
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Review
  14. Arabidopsis GH3.10 conjugates jasmonates.Plant biology (Stuttgart, Germany) · 2025
    Article
  15. Article
  16. Article
  17. Review
  18. Article
  19. Understanding the role of oxylipins inFrontiers in plant science · 2025
    Review
  20. Article

88 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

17 authors at 4 institutions in 2 countries.

Richard HickmanPlant-Microbe Interactions, Department of Biology, Utrecht University, 3508 TB, Utrecht, The Netherlands.ORCID http://orcid.org/0000-0002-4542-7740
Marcel C Van VerkPlant-Microbe Interactions, Department of Biology, Utrecht University, 3508 TB, Utrecht, The Netherlands.ORCID http://orcid.org/0000-0002-9982-8822
Anja J H Van DijkenPlant-Microbe Interactions, Department of Biology, Utrecht University, 3508 TB, Utrecht, The Netherlands.
Marciel Pereira MendesPlant-Microbe Interactions, Department of Biology, Utrecht University, 3508 TB, Utrecht, The Netherlands.
Irene A Vroegop-VosPlant-Microbe Interactions, Department of Biology, Utrecht University, 3508 TB, Utrecht, The Netherlands.
Lotte CaarlsPlant-Microbe Interactions, Department of Biology, Utrecht University, 3508 TB, Utrecht, The Netherlands.ORCID http://orcid.org/0000-0003-4578-1472
Merel SteenbergenPlant-Microbe Interactions, Department of Biology, Utrecht University, 3508 TB, Utrecht, The Netherlands.ORCID http://orcid.org/0000-0001-6163-0530
Ivo Van der NagelPlant-Microbe Interactions, Department of Biology, Utrecht University, 3508 TB, Utrecht, The Netherlands.
Gert Jan WesselinkPlant-Microbe Interactions, Department of Biology, Utrecht University, 3508 TB, Utrecht, The Netherlands.ORCID http://orcid.org/0000-0003-1791-5672
Aleksey JironkinWarwick Systems Biology Centre, University of Warwick, Coventry CV4 7AL, United Kingdom.
Adam TalbotSchool of Life Sciences, University of Warwick, Coventry CV4 7AL, United Kingdom.
Johanna RhodesWarwick Systems Biology Centre, University of Warwick, Coventry CV4 7AL, United Kingdom.ORCID http://orcid.org/0000-0002-1338-7860
Michel De VriesPlant Physiology, Swammerdam Institute for Life Sciences, University of Amsterdam, Science Park 904, 1098 XH Amsterdam, The Netherlands.
Robert C SchuurinkPlant Physiology, Swammerdam Institute for Life Sciences, University of Amsterdam, Science Park 904, 1098 XH Amsterdam, The Netherlands.ORCID http://orcid.org/0000-0002-9223-9996
Katherine DenbyWarwick Systems Biology Centre, University of Warwick, Coventry CV4 7AL, United Kingdom.ORCID http://orcid.org/0000-0002-7857-6814
Corné M J PietersePlant-Microbe Interactions, Department of Biology, Utrecht University, 3508 TB, Utrecht, The Netherlands.ORCID http://orcid.org/0000-0002-5473-4646
Saskia C M Van WeesPlant-Microbe Interactions, Department of Biology, Utrecht University, 3508 TB, Utrecht, The Netherlands s.vanwees@uu.nl.ORCID http://orcid.org/0000-0002-2295-7271
Utrecht University · NLUniversity of Warwick · GBUniversity of Amsterdam · NLUniversity of Applied Sciences Utrecht · NL

Funding

Biotechnology and Biological Sciences Research Council BB/F005806/1Biotechnology and Biological Sciences Research Council BBS/E/H/00KD0273European Research Council 269072
6 · The paper itself

Abstract

Jasmonic acid (JA) is a critical hormonal regulator of plant growth and defense. To advance our understanding of the architecture and dynamic regulation of the JA gene regulatory network, we performed a high-resolution RNA-seq time series of methyl JA-treated

Indexed as

Gene Regulatory NetworksAcetatesAnimalsArabidopsisBase SequenceCyclopentanesDNA, PlantGene Expression ProfilingGene Expression Regulation, PlantGenes, PlantInsectaMultigene FamilyNucleotide MotifsOxylipinsTime FactorsTranscription FactorsAcetatesCyclopentanesDNA, Plantjasmonic acidmethyl jasmonateOxylipinsTranscription Factors

Identifiers

PMID28827376
PMCPMC5635973
OpenAlexW2951716158

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.