Evidence map›Paper›PMID 28827354›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2017

Covalent inhibitors for eradication of drug-resistant HIV-1 reverse transcriptase: From design to protein crystallography.

Albert H Chan, Won-Gil Lee, Krasimir A Spasov, José A Cisneros, Shalley N Kudalkar, Zaritza O Petrova, Amanda B Buckingham, Karen S Anderson, William L Jorgensen

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed.

  1. Review
  2. Review
  3. Article
  4. Review
  5. Review
  6. Article
  7. Article
  8. Review
  9. Covalent Modification of the JH2 Domain of Janus Kinase 2.ACS medicinal chemistry letters · 2022
    Article
  10. Review
  11. Article
  12. Review
  13. Review
  14. Review
  15. Article
  16. Article
  17. Review
  18. Article
  19. LigBuilder V3: A Multi-TargetFrontiers in chemistry · 2020
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Albert H ChanDepartment of Pharmacology, Yale University School of Medicine, New Haven, CT 06520-8066.
Won-Gil LeeDepartment of Chemistry, Yale University, New Haven, CT 06520-8107.
Krasimir A SpasovDepartment of Pharmacology, Yale University School of Medicine, New Haven, CT 06520-8066.
José A CisnerosDepartment of Chemistry, Yale University, New Haven, CT 06520-8107.
Shalley N KudalkarDepartment of Pharmacology, Yale University School of Medicine, New Haven, CT 06520-8066.
Zaritza O PetrovaDepartment of Pharmacology, Yale University School of Medicine, New Haven, CT 06520-8066.
Amanda B BuckinghamDepartment of Pharmacology, Yale University School of Medicine, New Haven, CT 06520-8066.
Karen S AndersonDepartment of Pharmacology, Yale University School of Medicine, New Haven, CT 06520-8066; karen.anderson@yale.edu william.jorgensen@yale.edu.
William L JorgensenDepartment of Chemistry, Yale University, New Haven, CT 06520-8107 karen.anderson@yale.edu william.jorgensen@yale.edu.ORCID 0000-0002-3993-9520

Funding

Yale Clinical and Translational Science Award (U Component)UL1TR001863 · NCATS · YALE UNIVERSITY · PI John H. Krystal, LUCILA OHNO-MACHADO · 2016 to 2026
$102.9M
Overall EvaluationP41GM103403 · NIGMS · CORNELL UNIVERSITY · PI EALICK, STEVEN E · 2012 to 2017
$14.3M
PREDOCTORAL PROGRAM IN BIOPHYSICST32GM008283 · NIGMS · YALE UNIVERSITY · PI XIONG, YONG · 1988 to 2022
$10.5M
MECHANISM AND INHIBITION OF HIV REVERSE TRANSCRIPTASER01GM049551 · NIGMS · YALE UNIVERSITY · PI ANDERSON, KAREN S. · 1993 to 2019
$9.0M
POTENTIAL FUNCTIONS FOR WATER PROTEIN INTERACTIONSR01GM032136 · NIGMS · YALE UNIVERSITY · PI JORGENSEN, WILLIAM L. · 1985 to 2023
$8.2M
COMPUTER-AIDED DESIGN OF ANTIHIV DRUGSR01AI044616 · NIAID · YALE UNIVERSITY · PI JORGENSEN, WILLIAM L. · 1999 to 2022
$7.7M
Upgrade of a home source macromolecular X-ray diffraction system.S10OD018007 · OD · YALE UNIVERSITY · PI BOGGON, TITUS JONATHON · 2014 to 2014
$460k
Optimizing HIV reverse transcriptase inhibitors through structural, kinetic and cellular approachesF32AI122864 · NIAID · YALE UNIVERSITY · PI CHAN, ALBERT HAY WAH · 2016 to 2017
$112k
NCATS NIH HHS UL1 TR001863NIAID NIH HHS F32 AI122864NIAID NIH HHS R01 AI044616NIGMS NIH HHS P41 GM103403NIGMS NIH HHS R01 GM032136NIGMS NIH HHS R01 GM049551NIGMS NIH HHS T32 GM008283NIH HHS S10 OD018007
6 · The paper itself

Abstract

Development of resistance remains a major challenge for drugs to treat HIV-1 infections, including those targeting the essential viral polymerase, HIV-1 reverse transcriptase (RT). Resistance associated with the Tyr181Cys mutation in HIV-1 RT has been a key roadblock in the discovery of nonnucleoside RT inhibitors (NNRTIs). It is the principal point mutation that arises from treatment of HIV-infected patients with nevirapine, the first-in-class drug still widely used, especially in developing countries. We report covalent inhibitors of Tyr181Cys RT (CRTIs) that can completely knock out activity of the resistant mutant and of the particularly challenging Lys103Asn/Tyr181Cys variant. Conclusive evidence for the covalent modification of Cys181 is provided from enzyme inhibition kinetics, mass spectrometry, protein crystallography, and antiviral activity in infected human T-cell assays. The CRTIs are also shown to be selective for Cys181 and have lower cytotoxicity than the approved NNRTI drugs efavirenz and rilpivirine.

Indexed as

Amino Acid SubstitutionAnti-HIV AgentsCell LineCrystallography, X-RayDrug DesignDrug Resistance, ViralHIV-1HIV Reverse TranscriptaseHumansKineticsModels, MolecularPoint MutationProtein ConformationReverse Transcriptase InhibitorsSpectrometry, Mass, Electrospray IonizationAnti-HIV AgentsHIV Reverse Transcriptasereverse transcriptase, Human immunodeficiency virus 1Reverse Transcriptase Inhibitorscovalent inhibitorsHIVmass spectrometryreverse transcriptaseX-ray crystallography

Identifiers

PMID28827354
PMCPMC5594698

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.