Evidence map›Paper›PMID 28827185›Full record

ArticleJournal of structural biology2017

Best practices for managing large CryoEM facilities.

Bart Alewijnse, Alun W Ashton, Melissa G Chambers, Songye Chen, Anchi Cheng, Mark Ebrahim, Edward T Eng, Wim J H Hagen, Abraham J Koster, Claudia S López and 16 more

Abstract readConference Proceedings
In one paragraph

Article in Journal of structural biology, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
  4. Review
  5. Article
  6. Development of CryoVR, a virtual reality training system for hands-on cryoEM operations.Acta crystallographica. Section D, Structural biology · 2022
    Article
  7. Review
  8. Review
  9. Article
  10. From Tube to Structure: SPA Cryo-EM Workflow Using Apoferritin as an Example.Methods in molecular biology (Clifton, N.J.) · 2021
    Article
  11. Article
  12. Article
  13. Industrial cryo-EM facility setup and management.Acta crystallographica. Section D, Structural biology · 2020
    Article
  14. Article
  15. Article
  16. Article
  17. Reducing cryoEM file storage using lossy image formats.Journal of structural biology · 2019
    Article
  18. CM01: a facility for cryo-electron microscopy at the European Synchrotron.Acta crystallographica. Section D, Structural biology · 2019
    Article
  19. Editorial: Technical Advances in Cryo-Electron Microscopy.Frontiers in molecular biosciences · 2019
    Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

26 authors.

Bart AlewijnseNeCEN, Leiden University, Netherlands.
Alun W AshtonDiamond Light Source, United Kingdom.
Melissa G ChambersHarvard Medical School, United States.
Songye ChenCalifornia Institute of Technology, United States.
Anchi ChengNew York Structural Biology Center, United States.
Mark EbrahimThe Rockefeller University, United States.
Edward T EngNew York Structural Biology Center, United States.
Wim J H HagenEMBL Heidelberg, Germany.
Abraham J KosterNeCEN, Leiden University, Netherlands.
Claudia S LópezOregon Health & Science University, United States.
Natalya LukoyanovaISMB/Birkbeck, United Kingdom.
Joaquin OrtegaMcGill University, Canada.
Ludovic RenaultNeCEN, Leiden University, Netherlands.
Steve ReyntjensFEI Company/Thermo Fisher Scientific, United States.
William J RiceNew York Structural Biology Center, United States.
Giovanna ScapinMerck & Co, Inc., United States.
Raymond SchrijverFEI Company/Thermo Fisher Scientific, United States.
Alistair SiebertDiamond Light Source, United Kingdom.
Scott M StaggFlorida State University, United States.
Valerie Grum-TokarsNorthwestern University, United States.
Elizabeth R WrightEmory University School of Medicine, United States.
Shenping WuYale University, United States.
Zhiheng YuHHMI Janelia Research Campus, United States.
Z Hong ZhouUniversity of California, Los Angeles, United States.
Bridget CarragherNew York Structural Biology Center, United States.
Clinton S PotterNew York Structural Biology Center, United States. Electronic address: cpotter@nysbc.org.

Funding

TRD #3: An automated and streamlined pipeline for in-situ molecular microscopyP41GM103310 · NIGMS · SCRIPPS RESEARCH INSTITUTE, THE · PI DE MARCO, ALEX, KIEFT, JEFFREY S · 2012 to 2021
$14.7M
NIGMS NIH HHS P41 GM103310
6 · The paper itself

Abstract

This paper provides an overview of the discussion and presentations from the Workshop on the Management of Large CryoEM Facilities held at the New York Structural Biology Center, New York, NY on February 6-7, 2017. A major objective of the workshop was to discuss best practices for managing cryoEM facilities. The discussions were largely focused on supporting single-particle methods for cryoEM and topics included: user access, assessing projects, workflow, sample handling, microscopy, data management and processing, and user training.

Indexed as

Cryoelectron MicroscopyResearchWorkflowAutomationCryotemData managementFacility managementSingle-particleUser training

Identifiers

PMID28827185
PMCPMC5605453

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.