Evidence map›Paper›PMID 28826909›Full record

ArticleBiochimica et biophysica acta. Bioenergetics2017

Engineering of a calcium-ion binding site into the RC-LH1-PufX complex of Rhodobacter sphaeroides to enable ion-dependent spectral red-shifting.

David J K Swainsbury, Elizabeth C Martin, Cvetelin Vasilev, Pamela S Parkes-Loach, Paul A Loach, C Neil Hunter

Open access · hybridAbstract read
In one paragraph

Article in Biochimica et biophysica acta. Bioenergetics, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
0.9field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 17 citations in OpenAlex.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 2 countries.

David J K SwainsburyDepartment of Molecular Biology and Biotechnology, University of Sheffield, Firth Court, Western Bank, Sheffield, S10 2TN, United Kingdom. Electronic address: d.swainsbury@sheffield.ac.uk.
Elizabeth C MartinDepartment of Molecular Biology and Biotechnology, University of Sheffield, Firth Court, Western Bank, Sheffield, S10 2TN, United Kingdom.
Cvetelin VasilevDepartment of Molecular Biology and Biotechnology, University of Sheffield, Firth Court, Western Bank, Sheffield, S10 2TN, United Kingdom.
Pamela S Parkes-LoachDepartment of Molecular Biosciences, Northwestern University, Hogan 2100, 2205 Tech Drive, Evanston, IL 60208, United States.
Paul A LoachDepartment of Molecular Biosciences, Northwestern University, Hogan 2100, 2205 Tech Drive, Evanston, IL 60208, United States.
C Neil HunterDepartment of Molecular Biology and Biotechnology, University of Sheffield, Firth Court, Western Bank, Sheffield, S10 2TN, United Kingdom.
University of Sheffield · GBNorthwestern University · US

Funding

Biotechnology and Biological Sciences Research Council BB/M000265/1European Research Council 338895
6 · The paper itself

Abstract

The reaction centre-light harvesting 1 (RC-LH1) complex of Thermochromatium (Tch.) tepidum has a unique calcium-ion binding site that enhances thermal stability and red-shifts the absorption of LH1 from 880nm to 915nm in the presence of calcium-ions. The LH1 antenna of mesophilic species of phototrophic bacteria such as Rhodobacter (Rba.) sphaeroides does not possess such properties. We have engineered calcium-ion binding into the LH1 antenna of Rba. sphaeroides by progressively modifying the native LH1 polypeptides with sequences from Tch. tepidum. We show that acquisition of the C-terminal domains from LH1 α and β of Tch. tepidum is sufficient to activate calcium-ion binding and the extent of red-shifting increases with the proportion of Tch. tepidum sequence incorporated. However, full exchange of the LH1 polypeptides with those of Tch. tepidum results in misassembled core complexes. Isolated α and β polypeptides from our most successful mutant were reconstituted in vitro with BChl a to form an LH1-type complex, which was stabilised 3-fold by calcium-ions. Additionally, carotenoid specificity was changed from spheroidene found in Rba. sphaeroides to spirilloxanthin found in Tch. tepidum, with the latter enhancing in vitro formation of LH1. These data show that the C-terminal LH1 α/β domains of Tch. tepidum behave autonomously, and are able to transmit calcium-ion induced conformational changes to BChls bound to the rest of a foreign antenna complex. Thus, elements of foreign antenna complexes, such as calcium-ion binding and blue/red switching of absorption, can be ported into Rhodobacter sphaeroides using careful design processes.

Indexed as

Amino Acid SequenceBacterial ProteinsBinding SitesCalciumCarotenoidsCations, DivalentChromatiaceaeGene ExpressionGenetic EngineeringMutant Chimeric ProteinsPhotosynthetic Reaction Center Complex ProteinsProtein BindingRhodobacter sphaeroidesSequence AlignmentSequence Homology, Amino AcidXanthophyllsBacterial ProteinsCalciumCarotenoidsCations, DivalentMutant Chimeric ProteinsPhotosynthetic Reaction Center Complex ProteinsspheroidenespirilloxanthinXanthophyllsAntenna complexCalcium-ion bindingProtein engineeringReaction centreRhodobacter sphaeroidesThermochromatium tepidum

Identifiers

PMID28826909
PMCPMC5604489
OpenAlexW2748447183

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.