Evidence map›Paper›PMID 28826586›Full record

ArticleJournal of cystic fibrosis : official journal of the European Cystic Fibrosis Society2018

16S rRNA gene sequencing reveals site-specific signatures of the upper and lower airways of cystic fibrosis patients.

Sarah K Lucas, Robert Yang, Jordan M Dunitz, Holly C Boyer, Ryan C Hunter

Open access · bronzeAbstract read
In one paragraph

Article in Journal of cystic fibrosis : official journal of the European Cystic Fibrosis Society, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 30 papers.

0numbers the graph read from it
0cells of the map it votes in
30citing papers in PubMed
3.7field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

30 citing papers in PubMed, 62 citations in OpenAlex.

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  13. Effects of Freshwater Acidification on the Gut Microbial Community ofAnimals : an open access journal from MDPI · 2024
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Sarah K LucasDepartment of Microbiology & Immunology, University of Minnesota, USA. Electronic address: lucas156@umn.edu.
Robert YangDepartment of Otolaryngology, Head and Neck Surgery, University of Minnesota, USA. Electronic address: yang3375@umn.edu.
Jordan M DunitzDivision of Pulmonary, Allergy, Critical Care & Sleep Medicine, University of Minnesota, USA. Electronic address: dunit001@umn.edu.
Holly C BoyerDepartment of Otolaryngology, Head and Neck Surgery, University of Minnesota, USA. Electronic address: boyer011@umn.edu.
Ryan C HunterDepartment of Microbiology & Immunology, University of Minnesota, USA. Electronic address: rchunter@umn.edu.
University of Minnesota · US

Funding

Minnesota Craniofacial Research Training ProgramT90DE022732 · NIDCR · UNIVERSITY OF MINNESOTA · PI MANSKY, KIM CARPENTER · 2012 to 2023
$4.9M
Spatial characterization of microbial communities in the cystic fibrosis lungR00HL114862 · NHLBI · UNIVERSITY OF MINNESOTA · PI HUNTER, RYAN COULSON · 2013 to 2015
$713k
NHLBI NIH HHS R00 HL114862NIDCR NIH HHS T90 DE022732
6 · The paper itself

Abstract

backgroundMetastasis of upper airway microbiota may have significant implications in the development of chronic lung disease. Here, we compare bacterial communities of matched sinus and lung mucus samples from cystic fibrosis (CF) subjects undergoing endoscopic surgery for treatment of chronic sinusitis.

methodsMucus from one maxillary sinus and expectorated sputum were collected from twelve patients. 16S rRNA gene sequencing was then performed on sample pairs to compare the structure and function of CF airway microbiota.

resultsBacterial diversity was comparable between airway sites, though sinuses harbored a higher prevalence of dominant microorganisms. Ordination analyses revealed that samples clustered more consistently by airway niche rather than by individual. Finally, predicted metagenomes suggested that anaerobiosis was enriched in the lung.

conclusionsOur findings indicate that while the lung may be seeded by individual sinus pathogens, airway microenvironments harbor distinct bacterial communities that should be considered in selecting antimicrobial therapies.

Indexed as

AdultBacterial LoadChronic DiseaseCohort StudiesCystic FibrosisEndoscopyGram-Negative BacteriaGram-Positive BacteriaHumansLungMicrobiotaMiddle AgedParanasal SinusesRNA, BacterialRNA, Ribosomal, 16SSinusitisRNA, BacterialRNA, Ribosomal, 16SChronic sinusitisMicrobial ecologyMicrobiomeMucus

Identifiers

PMID28826586
PMCPMC5817045
OpenAlexW2607234332

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.