Evidence map›Paper›PMID 28826472›Full record

ArticleeLife2017

Systems biology derived source-sink mechanism of BMP gradient formation.

Joseph Zinski, Ye Bu, Xu Wang, Wei Dou, David Umulis, Mary C Mullins

Abstract read
In one paragraph

Article in eLife, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 57 papers.

0numbers the graph read from it
0cells of the map it votes in
57citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

57 citing papers in PubMed.

  1. Review
  2. Article
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  7. Article
  8. Quantitative Staging of Mid-blastula Zebrafish Embryos by Nuclei Counting.Methods in molecular biology (Clifton, N.J.) · 2025
    Article
  9. Article
  10. Review
  11. Article
  12. Shaping and Structuring of Polymer Gels.Gels (Basel, Switzerland) · 2024
    Article
  13. Article
  14. Article
  15. Review
  16. Article
  17. Article
  18. Article
  19. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Joseph ZinskiDepartment of Cell and DevelopmentalBiology, University of Pennsylvania Perelman School of Medicine, Philadelphia, United States.ORCID http://orcid.org/0000-0002-5120-5386
Ye BuDepartment of Agricultural and Biological Engineering, Purdue University, West Lafayette, United States.
Xu WangDepartment of Agricultural and Biological Engineering, Purdue University, West Lafayette, United States.
Wei DouDepartment of Agricultural and Biological Engineering, Purdue University, West Lafayette, United States.
David UmulisDepartment of Agricultural and Biological Engineering, Purdue University, West Lafayette, United States.ORCID http://orcid.org/0000-0003-1913-2284
Mary C MullinsDepartment of Cell and DevelopmentalBiology, University of Pennsylvania Perelman School of Medicine, Philadelphia, United States.ORCID https://orcid.org/0000-0002-9979-1564

Funding

DORSAL/VENTRAL PATTERN FORMATION IN THE ZEBRAFISH EMBRYOR01GM056326 · NIGMS · UNIVERSITY OF PENNSYLVANIA · PI MULLINS, MARY C. · 1997 to 2018
$6.3M
Graduate Training in Developmental BiologyT32HD083185 · NICHD · UNIVERSITY OF PENNSYLVANIA · PI Michael Granato, Foteini Mourkioti · 2015 to 2026
$4.0M
Systems Analysis of BMP Regulation in Developing Zebrafish EmbryosR01HD073156 · NICHD · PURDUE UNIVERSITY · PI UMULIS, DAVID MICHAEL · 2013 to 2017
$1.5M
WNT GENES IN KIDNEY DEVELOPMENT OF THE MOUSEF32HD008318 · NICHD · HARVARD UNIVERSITY · PI PEPICELLI, CARMEN V · 1998 to 1998
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NICHD NIH HHS F32 HD008318NICHD NIH HHS R01 HD073156NICHD NIH HHS T32 HD083185NIGMS NIH HHS R01 GM056326
6 · The paper itself

Abstract

A morphogen gradient of Bone Morphogenetic Protein (BMP) signaling patterns the dorsoventral embryonic axis of vertebrates and invertebrates. The prevailing view in vertebrates for BMP gradient formation is through a counter-gradient of BMP antagonists, often along with ligand shuttling to generate peak signaling levels. To delineate the mechanism in zebrafish, we precisely quantified the BMP activity gradient in wild-type and mutant embryos and combined these data with a mathematical model-based computational screen to test hypotheses for gradient formation. Our analysis ruled out a BMP shuttling mechanism and a

Indexed as

Systems BiologyAnimalsBiophysical PhenomenaBody PatterningBone Morphogenetic Protein 2Bone Morphogenetic ProteinsDrosophila ProteinsEmbryo, NonmammalianGene Expression Regulation, DevelopmentalGlycoproteinsIntercellular Signaling Peptides and ProteinsModels, BiologicalModels, TheoreticalMorphogenesisMutationSignal Transductionbmp2b protein, zebrafishBone Morphogenetic Protein 2Bone Morphogenetic ProteinschordinDrosophila ProteinsGlycoproteinsIntercellular Signaling Peptides and ProteinsSmad5 ProteinZebrafish ProteinsBMP diffusionBMP shuttlingBMP signalingcomputational biologycounter-gradientdevelopmental biologymathematical model-based computational screensquantitative analysisstem cellssystems biologyzebrafish

Identifiers

PMID28826472
PMCPMC5590806

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.