Evidence map›Paper›PMID 28825733›Full record

ArticleNature structural & molecular biology2017

Discovery of a cryptic peptide-binding site on PCSK9 and design of antagonists.

Yingnan Zhang, Mark Ultsch, Nicholas J Skelton, Daniel J Burdick, Maureen H Beresini, Wei Li, Monica Kong-Beltran, Andrew Peterson, John Quinn, Cecilia Chiu and 6 more

Abstract read
PubMed Publisher
In one paragraph

Article in Nature structural & molecular biology, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
7.1field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 64 citations in OpenAlex.

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  17. Review
  18. Inhibition of PCSK9ACS medicinal chemistry letters · 2019
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors.

Yingnan ZhangDepartment of Early Discovery Biochemistry, Genentech, Inc., South San Francisco, California, USA.
Mark UltschDepartment of Structural Biology, Genentech, Inc., South San Francisco, California, USA.
Nicholas J SkeltonDepartment of Discovery Chemistry, Genentech, Inc., South San Francisco, California, USA.
Daniel J BurdickDepartment of Discovery Chemistry, Genentech, Inc., South San Francisco, California, USA.
Maureen H BeresiniDepartment of Biochemical and Cellular Pharmacology, Genentech, Inc., South San Francisco, California, USA.
Wei LiDepartment of Early Discovery Biochemistry, Genentech, Inc., South San Francisco, California, USA.
Monica Kong-BeltranDepartment of Molecular Biology, Genentech, Inc., South San Francisco, California, USA.
Andrew PetersonDepartment of Molecular Biology, Genentech, Inc., South San Francisco, California, USA.
John QuinnDepartment of Biochemical and Cellular Pharmacology, Genentech, Inc., South San Francisco, California, USA.
Cecilia ChiuDepartment of Antibody Engineering, Genentech, Inc., South San Francisco, California, USA.
Yan WuDepartment of Antibody Engineering, Genentech, Inc., South San Francisco, California, USA.
Steven ShiaDepartment of Structural Biology, Genentech, Inc., South San Francisco, California, USA.
Paul MoranDepartment of Early Discovery Biochemistry, Genentech, Inc., South San Francisco, California, USA.
Paola Di LelloDepartment of Structural Biology, Genentech, Inc., South San Francisco, California, USA.
Charles EigenbrotDepartment of Structural Biology, Genentech, Inc., South San Francisco, California, USA.
Daniel KirchhoferDepartment of Early Discovery Biochemistry, Genentech, Inc., South San Francisco, California, USA.ORCID http://orcid.org/0000-0002-0975-4402

Funding

Pilatus 6mS10OD021832 · OD · UNIVERSITY OF CALIFORNIA BERKELEY · PI ADAMS, PAUL DAVID · 2016 to 2016
$980k
NIH HHS S10 OD021832
6 · The paper itself

Abstract

Proprotein convertase subtilisin/kexin type 9 (PCSK9) regulates plasma LDL cholesterol (LDL-c) levels by promoting the degradation of liver LDL receptors (LDLRs). Antibodies that inhibit PCSK9 binding to the EGF(A) domain of the LDLR are effective in lowering LDL-c. However, the discovery of small-molecule therapeutics is hampered by difficulty in targeting the relatively flat EGF(A)-binding site on PCSK9. Here we demonstrate that it is possible to target this site, based on the finding that the PCSK9 P' helix displays conformational flexibility. As a consequence, the vacated N-terminal groove of PCSK9, which is adjacent to the EGF(A)-binding site, is in fact accessible to small peptides. In phage-display experiments, the EGF(A)-mimicking peptide Pep2-8 was used as an anchor peptide for the attachment of an extension peptide library directed toward the groove site. Guided by structural information, we further engineered the identified groove-binding peptides into antagonists, which encroach on the EGF(A)-binding site and inhibit LDLR binding.

Indexed as

PCSK9 InhibitorsBinding SitesEnzyme InhibitorsHumansMolecular Docking SimulationPeptide LibraryPeptidesProprotein Convertase 9Enzyme InhibitorsPCSK9 InhibitorsPCSK9 protein, humanPeptide LibraryPeptidesProprotein Convertase 9

Identifiers

PMID28825733
OpenAlexW2750222245

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.