Evidence map›Paper›PMID 28825728›Full record

ArticleNature genetics2017

Cis and trans determinants of epigenetic silencing by Polycomb repressive complex 2 in Arabidopsis.

Jun Xiao, Run Jin, Xiang Yu, Max Shen, John D Wagner, Armaan Pai, Claire Song, Michael Zhuang, Samantha Klasfeld, Chongsheng He and 13 more

Open access · greenAbstract read
PubMed Publisher
In one paragraph

Article in Nature genetics, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 160 papers.

0numbers the graph read from it
0cells of the map it votes in
160citing papers in PubMed
48.2field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

160 citing papers in PubMed, 298 citations in OpenAlex.

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100 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

23 authors at 8 institutions in 5 countries.

Jun XiaoDepartment of Biology, University of Pennsylvania, Philadelphia, Pennsylvania, USA.ORCID http://orcid.org/0000-0001-7055-4832
Run JinDepartment of Biology, University of Pennsylvania, Philadelphia, Pennsylvania, USA.
Xiang YuDepartment of Biology, University of Pennsylvania, Philadelphia, Pennsylvania, USA.ORCID http://orcid.org/0000-0002-5730-8802
Max ShenDepartment of Biology, University of Pennsylvania, Philadelphia, Pennsylvania, USA.
John D WagnerDepartment of Biology, University of Pennsylvania, Philadelphia, Pennsylvania, USA.
Armaan PaiDepartment of Biology, University of Pennsylvania, Philadelphia, Pennsylvania, USA.
Claire SongDepartment of Biology, University of Pennsylvania, Philadelphia, Pennsylvania, USA.
Michael ZhuangDepartment of Biology, University of Pennsylvania, Philadelphia, Pennsylvania, USA.
Samantha KlasfeldDepartment of Biology, University of Pennsylvania, Philadelphia, Pennsylvania, USA.
Chongsheng HeDepartment of Cell and Developmental Biology, University of Pennsylvania, Philadelphia, Pennsylvania, USA.
Alexandre M SantosDepartment of Plant Biology, University of Georgia, Athens, Georgia, USA.
Chris HelliwellCSIRO Agriculture and Food, Canberra, Australia.ORCID http://orcid.org/0000-0001-5943-897X
Jose L Pruneda-PazDivision of Biology, University of California, San Diego, La Jolla, California, USA.
Steve A KayDepartment of Neurology, Keck School of Medicine, University of Southern California, Los Angeles, California, USA.
Xiaowei LinCollege of Life Science, Hebei Normal University, Hebei, People's Republic of China.
Sujuan CuiCollege of Life Science, Hebei Normal University, Hebei, People's Republic of China.
Meilin Fernandez GarciaDepartment of Biochemistry and Biophysics, University of Pennsylvania, Philadelphia, Pennsylvania, USA.
Oliver ClarenzInstitute of Molecular Plant Science, School of Biological Sciences, University of Edinburgh, Edinburgh, UK.
Justin GoodrichInstitute of Molecular Plant Science, School of Biological Sciences, University of Edinburgh, Edinburgh, UK.
Xiaoyu ZhangDepartment of Plant Biology, University of Georgia, Athens, Georgia, USA.
Ryan S AustinAgriculture &Agri-Foods Canada, London, Ontario, Canada.
Roberto BonasioDepartment of Cell and Developmental Biology, University of Pennsylvania, Philadelphia, Pennsylvania, USA.ORCID http://orcid.org/0000-0002-0767-0889
Doris WagnerDepartment of Biology, University of Pennsylvania, Philadelphia, Pennsylvania, USA.ORCID http://orcid.org/0000-0003-4656-2490
University of Pennsylvania · USHebei Normal University · CNUniversity of Edinburgh · GBUniversity of Georgia · USCommonwealth Scientific and Industrial Research Organisation · AUUniversity of California San Diego · USUniversity of Southern California · USWestern University · CA

Funding

Biotechnology and Biological Sciences Research Council BB/H004319/1
6 · The paper itself

Abstract

Disruption of gene silencing by Polycomb protein complexes leads to homeotic transformations and altered developmental-phase identity in plants. Here we define short genomic fragments, known as Polycomb response elements (PREs), that direct Polycomb repressive complex 2 (PRC2) placement at developmental genes regulated by silencing in Arabidopsis thaliana. We identify transcription factor families that bind to these PREs, colocalize with PRC2 on chromatin, physically interact with and recruit PRC2, and are required for PRC2-mediated gene silencing in vivo. Two of the cis sequence motifs enriched in the PREs are cognate binding sites for the identified transcription factors and are necessary and sufficient for PRE activity. Thus PRC2 recruitment in Arabidopsis relies in large part on binding of trans-acting factors to cis-localized DNA sequence motifs.

Indexed as

Gene Expression Regulation, PlantGene SilencingAmino Acid MotifsArabidopsisArabidopsis ProteinsBinding SitesDNA, PlantEpigenetic RepressionFlowersGene OntologyHigh-Throughput Screening AssaysMultigene FamilyPlant LeavesPlants, Genetically ModifiedPolycomb-Group ProteinsPolycomb Repressive Complex 2Arabidopsis ProteinsDNA, PlantPolycomb-Group ProteinsPolycomb Repressive Complex 2Transcription Factors

Identifiers

PMID28825728
OpenAlexW2747548029

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.