Evidence map›Paper›PMID 28825698›Full record

ArticleNature cell biology2017

A regulated PNUTS mRNA to lncRNA splice switch mediates EMT and tumour progression.

Simon Grelet, Laura A Link, Breege Howley, Clémence Obellianne, Viswanathan Palanisamy, Vamsi K Gangaraju, J Alan Diehl, Philip H Howe

Erratum issuedOpen access · greenAbstract read
In one paragraph

Article in Nature cell biology, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 199 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
199citing papers in PubMed, 1 pooled it
10.9field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

199 citing papers in PubMed, 1 synthesis or guideline pooled it, 395 citations in OpenAlex.

  1. Alternative splicing and cancer: a systematic review.Signal transduction and targeted therapy · 2021
    Pooled it
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  3. Role of alternative splicing in cancer progression.Irish journal of medical science · 2026
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139 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

8 authors at 1 institution in 1 country.

Simon GreletDepartment of Biochemistry, Medical University of South Carolina, Charleston, South Carolina 29425, USA.
Laura A LinkDepartment of Biochemistry, Medical University of South Carolina, Charleston, South Carolina 29425, USA.
Breege HowleyDepartment of Biochemistry, Medical University of South Carolina, Charleston, South Carolina 29425, USA.
Clémence ObellianneDepartment of Biochemistry, Medical University of South Carolina, Charleston, South Carolina 29425, USA.
Viswanathan PalanisamyDepartment of Oral Health Sciences, Medical University of South Carolina, Charleston, South Carolina 29425, USA.
Vamsi K GangarajuDepartment of Biochemistry, Medical University of South Carolina, Charleston, South Carolina 29425, USA.
J Alan DiehlDepartment of Biochemistry, Medical University of South Carolina, Charleston, South Carolina 29425, USA.
Philip H HoweDepartment of Biochemistry, Medical University of South Carolina, Charleston, South Carolina 29425, USA.ORCID http://orcid.org/0000-0002-1358-1313
Medical University of South Carolina · US

Funding

Translational Science Laboratory Shared ResourceP30CA138313 · NCI · MEDICAL UNIVERSITY OF SOUTH CAROLINA · PI Jian Ouyang · 2009 to 2026
$42.7M
TGF-regulated EMTR01CA154663 · NCI · MEDICAL UNIVERSITY OF SOUTH CAROLINA · PI Philip H Howe · 2011 to 2026
$5.1M
TRANSFORMING GROWTH FACTOR BETA SIGNALING PATHWAYSR01CA055536 · NCI · MEDICAL UNIVERSITY OF SOUTH CAROLINA · PI HOWE, PHILIP H · 1997 to 2017
$5.0M
Confocal/Multiphoton Microscope UpgradeS10OD018113 · OD · MEDICAL UNIVERSITY OF SOUTH CAROLINA · PI LEMASTERS, JOHN J · 2015 to 2015
$570k
NCI NIH HHS P30 CA138313NCI NIH HHS R01 CA055536NCI NIH HHS R01 CA154663NIH HHS S10 OD018113
6 · The paper itself

Abstract

The contribution of lncRNAs to tumour progression and the regulatory mechanisms driving their expression are areas of intense investigation. Here, we characterize the binding of heterogeneous nuclear ribonucleoprotein E1 (hnRNP E1) to a nucleic acid structural element located in exon 12 of PNUTS (also known as PPP1R10) pre-RNA that regulates its alternative splicing. HnRNP E1 release from this structural element, following its silencing, nucleocytoplasmic translocation or in response to TGFβ, allows alternative splicing and generates a non-coding isoform of PNUTS. Functionally the lncRNA-PNUTS serves as a competitive sponge for miR-205 during epithelial-mesenchymal transition (EMT). In mesenchymal breast tumour cells and in breast tumour samples, the expression of lncRNA-PNUTS is elevated and correlates with levels of ZEB mRNAs. Thus, PNUTS is a bifunctional RNA encoding both PNUTS mRNA and lncRNA-PNUTS, each eliciting distinct biological functions. While PNUTS mRNA is ubiquitously expressed, lncRNA-PNUTS appears to be tightly regulated dependent on the status of hnRNP E1 and tumour context.

Indexed as

Alternative SplicingEpithelial-Mesenchymal TransitionA549 CellsAnimalsBinding SitesBreast NeoplasmsCaco-2 CellsCell MovementDNA-Binding ProteinsExonsFemaleGene Expression Regulation, NeoplasticHeterogeneous-Nuclear RibonucleoproteinsHumansLung NeoplasmsMCF-7 CellsDNA-Binding ProteinsHeterogeneous-Nuclear RibonucleoproteinsMicroRNAsMIR205, humanNuclear ProteinsPCBP1 protein, humanPPP1R10 protein, humanRNA-Binding ProteinsRNA, Long NoncodingRNA, MessengerRNA PrecursorsRNA Splice SitesZEB1 protein, humanZinc Finger E-box-Binding Homeobox 1

Identifiers

PMID28825698
PMCPMC5578890
OpenAlexW2746147763

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.