Evidence map›Paper›PMID 28825155›Full record

ArticleJournal of clinical immunology2017

Detection of Sp110 by Flow Cytometry and Application to Screening Patients for Veno-occlusive Disease with Immunodeficiency.

Florian A Marquardsen, Fabian Baldin, Florian Wunderer, Waleed Al-Herz, Raymond Mikhael, Gérard Lefranc, Zeina Baz, Fariba Rezaee, Rabi Hanna, Shlomit Kfir-Erenfeld and 15 more

Open access · greenAbstract read
In one paragraph

Article in Journal of clinical immunology, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
0.9field-weighted citation impact, top 28% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 15 citations in OpenAlex.

  1. Article
  2. Review
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  4. Trends in the Epidemiology ofJournal of fungi (Basel, Switzerland) · 2023
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

25 authors at 14 institutions in 6 countries.

Florian A MarquardsenImmunodeficiency Laboratory, Department of Biomedicine, Basel University Hospital, Basel, Switzerland.
Fabian BaldinImmunodeficiency Laboratory, Department of Biomedicine, Basel University Hospital, Basel, Switzerland.
Florian WundererAnesthesia Center for Critical Care Research of the Department of Anesthesia, Critical Care, and Pain Medicine, Harvard Medical School and Massachusetts General Hospital, Massachusetts, MA, 02114, USA.
Waleed Al-HerzDepartment of Pediatrics, Faculty of Medicine, Kuwait University, Kuwait City, Kuwait.
Raymond MikhaelPediatrics Department, Hotel-Dieu Hospital, St Joseph University, Beirut, Lebanon.
Gérard LefrancInstitute of Human Genetics, UMR 9002 CNRS-University of Montpellier, 34095, Montpellier Cedex 5, France.
Zeina BazSaint George Hospital, University Medical Center, Beirut, Lebanon.
Fariba RezaeeCenter for Pediatric Pulmonary Medicine, Cleveland Clinic, Cleveland, OH, USA.
Rabi HannaPediatric Hematology Oncology and Blood and Marrow Transplantation, Cleveland Clinic, Cleveland, OH, USA.
Shlomit Kfir-ErenfeldBone Marrow Transplantation Department, Hadassah Hospital, Jerusalem, Israel.
Polina StepenskyBone Marrow Transplantation Department, Hadassah Hospital, Jerusalem, Israel.
Benedikt MeyerImmunodeficiency Laboratory, Department of Biomedicine, Basel University Hospital, Basel, Switzerland.
Annaise JauchImmunodeficiency Laboratory, Department of Biomedicine, Basel University Hospital, Basel, Switzerland.
Marc B BiglerImmune Deficiency Genetics Section, Laboratory of Host Defenses, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, MD, USA.
Anne-Valérie BurgenerImmunobiology Laboratory, Department of Biomedicine, University Hospital of Basel, Basel, Switzerland.
Rebecca HigginsDepartment of Dermatology, University Hospital Zurich, Zurich, Switzerland.
Alexander A NavariniDepartment of Dermatology, University Hospital Zurich, Zurich, Switzerland.
Joeseph A ChurchDivision of Clinical Immunology and Allergy, Children's Hospital Los Angeles, Keck School of Medicine of University Southern California, Los Angeles, CA, USA.
Janet ChouDivision of Immunology, Children's Hospital Boston, Boston, MA, USA.
Raif GehaDivision of Immunology, Children's Hospital Boston, Boston, MA, USA.
Luigi D NotarangeloImmune Deficiency Genetics Section, Laboratory of Host Defenses, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, MD, USA.
Christoph HessImmunobiology Laboratory, Department of Biomedicine, University Hospital of Basel, Basel, Switzerland.
Christoph T BergerTranslational Immunology, Department of Biomedicine, University Hospital of Basel, Basel, Switzerland.
Donald B BlochAnesthesia Center for Critical Care Research of the Department of Anesthesia, Critical Care, and Pain Medicine, Harvard Medical School and Massachusetts General Hospital, Massachusetts, MA, 02114, USA.
Mike RecherImmunodeficiency Laboratory, Department of Biomedicine, Basel University Hospital, Basel, Switzerland. mike.recher@usb.ch.
University Hospital of Basel · CHBoston Children's Hospital · USCleveland Clinic · USHerzog Hospital · ILNational Institute of Allergy and Infectious Diseases · USUniversity Hospital of Zurich · CHChildren's Hospital of Los Angeles · USHarvard University · USInstitut de Génétique Humaine · FRKuwait University · KWMassachusetts General Hospital · USSaint George Hospital · LBSaint Joseph University · LBUniversity of Basel · CH

Funding

Characterization of the cellular and molecular bases of inborn errors of immunityZIAAI001222 · NIAID · NATIONAL INSTITUTE OF ALLERGY AND INFECTIOUS DISEASES · PI NOTARANGELO, LUIGI · 2017 to 2025
$15.2M
Airway Epithelial Barrier Dysfunction In Response to Respiratory Syncytial VirusK08AI112781 · NIAID · UNIVERSITY OF ROCHESTER · PI REZAEE, FARIBA · 2015 to 2018
$734k
Intramural NIH HHS Z99 AI999999NIAID NIH HHS K08 AI112781Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung PP00P3_144863
6 · The paper itself

Abstract

Mutations in Sp110 are the underlying cause of veno-occlusive disease with immunodeficiency (VODI), a combined immunodeficiency that is difficult to treat and often fatal. Because early treatment is critically important for patients with VODI, broadly usable diagnostic tools are needed to detect Sp110 protein deficiency. Several factors make establishing the diagnosis of VODI challenging: (1) Current screening strategies to identify severe combined immunodeficiency are based on measuring T cell receptor excision circles (TREC). This approach will fail to identify VODI patients because the disease is not associated with severe T cell lymphopenia at birth; (2) the SP110 gene contains 17 exons, making it a challenge for Sanger sequencing. The recently developed next-generation sequencing (NGS) platforms that can rapidly determine the sequence of all 17 exons are available in only a few laboratories; (3) there is no standard functional assay to test for the effects of novel mutations in Sp110; and (4) it has been difficult to use flow cytometry to identify patients who lack Sp110 because of the low level of Sp110 protein in peripheral blood lymphocytes. We report here a novel flow cytometric assay that is easily performed in diagnostic laboratories and might thus become a standard assay for the evaluation of patients who may have VODI. In addition, the assay will facilitate investigations directed at understanding the function of Sp110.

Indexed as

AdenoviridaeCell Line, TumorChildChild, PreschoolFemaleFlow CytometryHepatic Veno-Occlusive DiseaseHumansImmunologic Deficiency SyndromesLeukocytes, MononuclearMaleMinor Histocompatibility AntigensNuclear ProteinsT-LymphocytesMinor Histocompatibility AntigensNuclear ProteinsSp110 protein, humanCombined immunodeficiencyFlow cytometryNewborn screeningPneumocystisPrimary immunodeficiencySp110Veno-occlusive disease with immunodeficiencyVODI

Identifiers

PMID28825155
PMCPMC6069968
OpenAlexW2749259655

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.