ArticleFrontiers in microbiology2017
Pan-genome Analyses of the Species
Article in Frontiers in microbiology, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 36 papers.
What it found
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
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Who cites it
36 citing papers in PubMed, 76 citations in OpenAlex.
- Comparative Genomics of Lacticaseibacillus paracasei Reveal the Metabolism of Major Carbohydrates in Soybean Molasses.Applied biochemistry and biotechnology · 2026Article
- Probing Genomic Diversity ofFoods (Basel, Switzerland) · 2026Article
- Genomic Markers Distinguishing Shiga Toxin-ProducingPathogens (Basel, Switzerland) · 2025Article
- Identification of Novel Gene-Specific Markers for Differentiating Various PathogenicPathogens (Basel, Switzerland) · 2025Article
- Worldwide Population Dynamics ofGenes · 2025Article
- Managing false positives during detection of pathogen sequences in shotgun metagenomics datasets.BMC bioinformatics · 2024Article
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- Comparative Genomic Analyses of Virulence and Antimicrobial Resistance inMicroorganisms · 2023Article
- SEN1990 is a predicted winged helix-turn-helix protein involved in the pathogenicity ofFrontiers in microbiology · 2023Article
- Article
- Critical assessment of pan-genomic analysis of metagenome-assembled genomes.Briefings in bioinformatics · 2022Article
- Application of microbial analyses to feeds and potential implications for poultry nutrition.Poultry science · 2022Review
- Systems-Based Approach for Optimization of Assembly-Free Bacterial MLST Mapping.Life (Basel, Switzerland) · 2022Article
- Prophage-mediated genome differentiation of theMicrobial genomics · 2022Article
- Pan-Genomic and Transcriptomic Analyses of MarineMarine drugs · 2022Article
- Application and Challenge of 3rd Generation Sequencing for Clinical Bacterial Studies.International journal of molecular sciences · 2022Review
- Salmonella Genomics in Public Health and Food Safety.EcoSal Plus · 2021Article
- Pan-Genome Portrait of Bacillus mycoides Provides Insights into the Species Ecology and Evolution.Microbiology spectrum · 2021Article
- Survival of Salmonella Under Heat Stress is Associated with the Presence/Absence of CRISPR Cas Genes and Iron Levels.Current microbiology · 2021Article
- Identification and Monitoring ofJournal of microbiology and biotechnology · 2021Article
Corrections and comments
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Authors and funding
3 authors at 1 institution in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Food safety is a global concern, with upward of 2.2 million deaths due to enteric disease every year. Current whole-genome sequencing platforms allow routine sequencing of enteric pathogens for surveillance, and during outbreaks; however, a remaining challenge is the identification of genomic markers that are predictive of strain groups that pose the most significant health threats to humans, or that can persist in specific environments. We have previously developed the software program Panseq, which identifies the pan-genome among a group of sequences, and the SuperPhy platform, which utilizes this pan-genome information to identify biomarkers that are predictive of groups of bacterial strains. In this study, we examined the pan-genome of 4893 genomes of
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Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.