Evidence map›Paper›PMID 28823155›Full record

ArticleJournal of the American Chemical Society2017

Visualizing the Reaction Cycle in an Iron(II)- and 2-(Oxo)-glutarate-Dependent Hydroxylase.

Andrew J Mitchell, Noah P Dunham, Ryan J Martinie, Jonathan A Bergman, Christopher J Pollock, Kai Hu, Benjamin D Allen, Wei-Chen Chang, Alexey Silakov, J Martin Bollinger and 2 more

Abstract read
In one paragraph

Article in Journal of the American Chemical Society, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 63 papers.

0numbers the graph read from it
0cells of the map it votes in
63citing papers in PubMed
4.8field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

63 citing papers in PubMed, 141 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Total Synthesis of (+)-12-The Journal of organic chemistry · 2026
    Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Review
  13. Influence of the second coordination sphere on OJournal of inorganic biochemistry · 2025
    Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article

3 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 1 institution in 1 country.

Andrew J MitchellDepartment of Biochemistry and Molecular Biology, The Pennsylvania State University , University Park, Pennsylvania 16802, United States.
Noah P DunhamDepartment of Biochemistry and Molecular Biology, The Pennsylvania State University , University Park, Pennsylvania 16802, United States.
Ryan J MartinieDepartment of Chemistry, The Pennsylvania State University , University Park, Pennsylvania 16802, United States.ORCID 0000-0003-1257-2850
Jonathan A BergmanDepartment of Chemistry, The Pennsylvania State University , University Park, Pennsylvania 16802, United States.
Christopher J PollockDepartment of Chemistry, The Pennsylvania State University , University Park, Pennsylvania 16802, United States.ORCID 0000-0001-5736-513X
Kai HuDepartment of Biochemistry and Molecular Biology, The Pennsylvania State University , University Park, Pennsylvania 16802, United States.
Benjamin D AllenDepartment of Biochemistry and Molecular Biology, The Pennsylvania State University , University Park, Pennsylvania 16802, United States.
Wei-Chen ChangDepartment of Chemistry, The Pennsylvania State University , University Park, Pennsylvania 16802, United States.ORCID 0000-0002-2341-9846
Alexey SilakovDepartment of Chemistry, The Pennsylvania State University , University Park, Pennsylvania 16802, United States.
J Martin BollingerDepartment of Biochemistry and Molecular Biology, The Pennsylvania State University , University Park, Pennsylvania 16802, United States.
Carsten KrebsDepartment of Biochemistry and Molecular Biology, The Pennsylvania State University , University Park, Pennsylvania 16802, United States.ORCID 0000-0002-3302-7053
Amie K BoalDepartment of Biochemistry and Molecular Biology, The Pennsylvania State University , University Park, Pennsylvania 16802, United States.ORCID 0000-0002-1234-8472
Pennsylvania State University · US

Funding

Mapping the Structural Basis for Mechanistic Diversity in Metalloenzyme SuperfamiliesR35GM119707 · NIGMS · PENNSYLVANIA STATE UNIVERSITY, THE · PI Amie K Boal · 2016 to 2026
$5.0M
High-Speed High-Sensitivity Detector for X-ray Micro-Crystallography at GM/CA@APSS10OD012289 · OD · UNIVERSITY OF CHICAGO · PI FISCHETTI, ROBERT F. · 2014 to 2014
$2.0M
Mechanisms of oxacycle- and olefin-installing iron/2-(oxo)glutarate oxygenasesR01GM113106 · NIGMS · PENNSYLVANIA STATE UNIVERSITY, THE · PI BOLLINGER, JOSEPH M, KREBS, CARSTEN · 2015 to 2018
$1.8M
Mechanisms and Reprogramming of Iron/2-Oxoglutarate Desaturases and OxacyclasesR01GM118812 · NIGMS · PENNSYLVANIA STATE UNIVERSITY, THE · PI BOLLINGER, JOSEPH M, KREBS, CARSTEN · 2016 to 2019
$1.0M
Mechanistic Determination of the Non-heme Iron Enzyme Hyoscyamine-6-hydroxylaseF32GM113389 · NIGMS · PENNSYLVANIA STATE UNIVERSITY, THE · PI POLLOCK, CHRISTOPHER · 2015 to 2017
$160k
NIGMS NIH HHS F32 GM113389NIGMS NIH HHS R01 GM113106NIGMS NIH HHS R01 GM118812NIGMS NIH HHS R35 GM119707NIH HHS S10 OD012289
6 · The paper itself

Abstract

Iron(II)- and 2-(oxo)-glutarate-dependent oxygenases catalyze diverse oxidative transformations that are often initiated by abstraction of hydrogen from carbon by iron(IV)-oxo (ferryl) complexes. Control of the relative orientation of the substrate C-H and ferryl Fe-O bonds, primarily by direction of the oxo group into one of two cis-related coordination sites (termed inline and offline), may be generally important for control of the reaction outcome. Neither the ferryl complexes nor their fleeting precursors have been crystallographically characterized, hindering direct experimental validation of the offline hypothesis and elucidation of the means by which the protein might dictate an alternative oxo position. Comparison of high-resolution X-ray crystal structures of the substrate complex, an Fe(II)-peroxysuccinate ferryl precursor, and a vanadium(IV)-oxo mimic of the ferryl intermediate in the l-arginine 3-hydroxylase, VioC, reveals coordinated motions of active site residues that appear to control the intermediate geometries to determine reaction outcome.

Indexed as

BiocatalysisCrystallography, X-RayFerrous CompoundsGlutaratesMixed Function OxygenasesModels, MolecularFerrous CompoundsGlutaratesMixed Function Oxygenases

Identifiers

PMID28823155
PMCPMC5852378
OpenAlexW2748658427

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.