Evidence map›Paper›PMID 28821745›Full record

ArticleScientific reports2017

Metabolomics and genomics combine to unravel the pathway for the presence of fragrance in rice.

Venea Dara Daygon, Mariafe Calingacion, Louise C Forster, James J De Voss, Brett D Schwartz, Ben Ovenden, David E Alonso, Susan R McCouch, Mary J Garson, Melissa A Fitzgerald

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
11.7field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 58 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 2 countries.

Venea Dara DaygonSchool of Agriculture and Food Sciences, The University of Queensland, St Lucia, QLD, 4072, Australia.
Mariafe CalingacionSchool of Agriculture and Food Sciences, The University of Queensland, St Lucia, QLD, 4072, Australia.
Louise C ForsterSchool of Chemistry and Molecular Biosciences, The University of Queensland, St Lucia, QLD, 4072, Australia.
James J De VossSchool of Chemistry and Molecular Biosciences, The University of Queensland, St Lucia, QLD, 4072, Australia.
Brett D SchwartzSchool of Chemistry and Molecular Biosciences, The University of Queensland, St Lucia, QLD, 4072, Australia.
Ben OvendenNSW Department of Primary Industries, Yanco Agricultural Institute, Yanco, NSW, 2703, Australia.
David E AlonsoLECO Corporation Life Science and Chemical Analysis Centre, 1850 Hilltop Rd, Saint Joseph, MI, 49085, USA.
Susan R McCouchDepartment of Plant Breeding & Genetics, Cornell University, Ithaca, NY, 14853, USA.
Mary J GarsonSchool of Chemistry and Molecular Biosciences, The University of Queensland, St Lucia, QLD, 4072, Australia.
Melissa A FitzgeraldSchool of Agriculture and Food Sciences, The University of Queensland, St Lucia, QLD, 4072, Australia. m.fitzgerald2@uq.edu.au.ORCID 0000-0002-0761-764X
The University of Queensland · AUCornell University · USLeco Corporation (United States) · USNew South Wales Department of Primary Industries · AU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Since it was first characterised in 1983, 2-acetyl-1-pyrroline (2AP) has been considered to be the most important aroma compound in rice. In this study, we show four other amine heterocycles: 6-methyl, 5-oxo-2,3,4,5-tetrahydropyridine (6M5OTP), 2-acetylpyrrole, pyrrole and 1-pyrroline, that correlate strongly with the production of 2AP, and are present in consistent proportions in a set of elite aromatic rice varieties from South East Asia and Australia as well as in a collection of recombinant inbred lines (RILs) derived from indica Jasmine-type varieties, Australian long grain varieties (temperate japonica) and Basmati-type rice (Grp V). These compounds were detected through untargeted metabolite profiling by two-dimensional gas chromatography-time-of-flight mass spectrometry (GC × GC-TOF-MS), and their identity were confirmed by comparison with authentic standards analysed using gas chromatography mass spectrometry (GC-MS) and High Resolution GC × GC-TOF-MS (GC × GC HRT-4D). Genome-wide association analysis indicates that all compounds co-localised with a single quantitative trait locus (QTL) that harbours the FGR gene responsible for the production of GABA. Together, these data provide new insights into the production of 2AP, and evidence for understanding the pathway leading to the accumulation of aroma in fragrant rice.

Indexed as

Gene Expression Regulation, PlantGenomicsMetabolomicsSignal TransductionGas Chromatography-Mass SpectrometryGene Expression ProfilingGene Regulatory NetworksGenome-Wide Association StudyOryzaProteomeSpectrometry, Mass, Matrix-Assisted Laser Desorption-IonizationProteome

Identifiers

PMID28821745
PMCPMC5562744
OpenAlexW2745323634

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.