Evidence map›Paper›PMID 28820917›Full record

ArticleInvestigative ophthalmology & visual science2017

Whole Exome Sequencing of Lacrimal Gland Adenoid Cystic Carcinoma.

David W Sant, Wensi Tao, Matthew G Field, Daniel Pelaez, Ke Jin, Anthony Capobianco, Sander R Dubovy, David T Tse, Gaofeng Wang

Open access · goldAbstract read
In one paragraph

Article in Investigative ophthalmology & visual science, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
2.7field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 29 citations in OpenAlex.

  1. Review
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  9. The emerging role of ISWI chromatin remodeling complexes in cancer.Journal of experimental & clinical cancer research : CR · 2021
    Review
  10. Article
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  15. Adenoid Cystic Carcinoma of the Lacrimal Gland.Journal of current ophthalmology
    Review
  16. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 1 institution in 1 country.

David W SantJohn P. Hussman Institute for Human Genomics, Dr. John T. Macdonald Foundation Department of Human Genetics, University of Miami Miller School of Medicine, Miami, Florida, United States.
Wensi TaoDr. Nasser Ibrahim Al-Rashid Orbital Vision Research Center, University of Miami Miller School of Medicine, Miami, Florida, United States.
Matthew G FieldBascom Palmer Eye Institute, University of Miami Miller School of Medicine, Miami, Florida, United States.
Daniel PelaezDr. Nasser Ibrahim Al-Rashid Orbital Vision Research Center, University of Miami Miller School of Medicine, Miami, Florida, United States.
Ke JinDepartment of Surgery, University of Miami Miller School of Medicine, Miami, Florida, United States.
Anthony CapobiancoDepartment of Surgery, University of Miami Miller School of Medicine, Miami, Florida, United States.
Sander R DubovyBascom Palmer Eye Institute, University of Miami Miller School of Medicine, Miami, Florida, United States.
David T TseDr. Nasser Ibrahim Al-Rashid Orbital Vision Research Center, University of Miami Miller School of Medicine, Miami, Florida, United States.
Gaofeng WangJohn P. Hussman Institute for Human Genomics, Dr. John T. Macdonald Foundation Department of Human Genetics, University of Miami Miller School of Medicine, Miami, Florida, United States.
University of Miami · US

Funding

Epigenetic Prevention of Diabetic Neuropathy by Vitamin CR01NS089525 · NINDS · UNIVERSITY OF MIAMI SCHOOL OF MEDICINE · PI WANG, GAOFENG · 2014 to 2017
$1.2M
University of Miami Computational Ocular Genomics Training ProgramT32EY023194 · NEI · UNIVERSITY OF MIAMI SCHOOL OF MEDICINE · PI SCOTT, WILLIAM K · 2013 to 2017
$661k
Epigenetic reprogramming of melanoma cells by vitamin C treatmentR21CA191668 · NCI · UNIVERSITY OF MIAMI SCHOOL OF MEDICINE · PI WANG, GAOFENG · 2015 to 2016
$367k
NCI NIH HHS R21 CA191668NEI NIH HHS T32 EY023194NINDS NIH HHS R01 NS089525
6 · The paper itself

Abstract

Purpose: To identify genomic mutations in lacrimal gland adenoid cystic carcinoma (LGACC) samples from patients. Methods: Genomic DNA was extracted from LGACC specimens. Whole exome sequencing (exome-seq) was conducted to screen for mutations. Capillary sequencing was performed to verify mutations in genes shared by multiple samples. Luciferase assays were used to evaluate functional consequences of NOTCH1 mutations. Results: The mutation profile of LGACC was complicated. The most frequently mutated gene observed (28.6%) was bromodomain PHD finger transcription factor (BPTF). No mutation was identified in common cancer genes such as TP53, KRAS, and BRAF. However, mutations predicted to be functionally severe were accumulated in the Notch signaling pathway including NOTCH1 and NOTCH2, of which mutations have been reported in head/neck adenoid cystic carcinoma (ACC). Of 14 LGACC samples, five samples carry mutations in Notch pathway genes. Capillary sequencing verified all the mutations in the two NOTCH genes identified by exome-seq. Compared to the wild-type NOTCH1, three frame shifting mutations and two missense mutations (C387W and L1600Q) increased luciferase activity approximately 10- to 25-fold. Conclusions: Major genomic mutation profiles in LGACC were uncovered by exome-seq. Although preliminary in nature, the Notch pathway could be a potential therapeutic target for LGACC.

Indexed as

Blotting, WesternCarcinoma, Adenoid CysticDNA, NeoplasmExomeEye NeoplasmsFrameshift MutationGenes, NeoplasmGenes, ReporterHumansLacrimal Apparatus DiseasesMutation, MissensePlasmidsReceptor, Notch1Receptor, Notch2Sequence Analysis, DNADNA, NeoplasmNOTCH1 protein, humanNOTCH2 protein, humanReceptor, Notch1Receptor, Notch2

Identifiers

PMID28820917
PMCPMC5562266
OpenAlexW2748297604

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.