Evidence map›Paper›PMID 28819626›Full record

ArticleBioMed research international2017

Robust Significance Analysis of Microarrays by Minimum

Md Shahjaman, Nishith Kumar, Md Manir Hossain Mollah, Md Shakil Ahmed, Anjuman Ara Begum, S M Shahinul Islam, Md Nurul Haque Mollah

Abstract read
In one paragraph

Article in BioMed research international, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Md ShahjamanBioinformatics Lab, Department of Statistics, University of Rajshahi, Rajshahi 6205, Bangladesh.ORCID 0000-0001-7434-922X
Nishith KumarBioinformatics Lab, Department of Statistics, University of Rajshahi, Rajshahi 6205, Bangladesh.ORCID 0000-0002-1911-4775
Md Manir Hossain MollahDepartment of Biostatistics, BUHS, Dhaka, Bangladesh.
Md Shakil AhmedBioinformatics Lab, Department of Statistics, University of Rajshahi, Rajshahi 6205, Bangladesh.ORCID 0000-0002-5027-1613
Anjuman Ara BegumBioinformatics Lab, Department of Statistics, University of Rajshahi, Rajshahi 6205, Bangladesh.
S M Shahinul IslamInstitute of Biological Science (IBSc), University of Rajshahi, Rajshahi 6205, Bangladesh.
Md Nurul Haque MollahBioinformatics Lab, Department of Statistics, University of Rajshahi, Rajshahi 6205, Bangladesh.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Identification of differentially expressed (DE) genes with two or more conditions is an important task for discovery of few biomarker genes. Significance Analysis of Microarrays (SAM) is a popular statistical approach for identification of DE genes for both small- and large-sample cases. However, it is sensitive to outlying gene expressions and produces low power in presence of outliers. Therefore, in this paper, an attempt is made to robustify the SAM approach using the minimum

Indexed as

AlgorithmsBiometryGene Expression ProfilingGene Expression RegulationMicroarray AnalysisOligonucleotide Array Sequence Analysis

Identifiers

PMID28819626
PMCPMC5551475

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.