Evidence map›Paper›PMID 28819239›Full record

ArticleNature communications2017

Sequential conformational transitions and α-helical supercoiling regulate a sensor histidine kinase.

Oskar Berntsson, Ralph P Diensthuber, Matthijs R Panman, Alexander Björling, Emil Gustavsson, Maria Hoernke, Ashley J Hughes, Léocadie Henry, Stephan Niebling, Heikki Takala and 10 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 50 papers.

0numbers the graph read from it
0cells of the map it votes in
50citing papers in PubMed
3.6field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

50 citing papers in PubMed, 79 citations in OpenAlex.

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  19. Structural insights into redox signal transduction mechanisms in the control of nitrogen fixation by the NifLA system.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  20. Reaction dynamics studiedChemical science · 2022
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

20 authors at 9 institutions in 6 countries.

Oskar BerntssonUniversity of Gothenburg, 40530, Gothenburg, Sweden.
Ralph P DiensthuberHumboldt-Universität zu Berlin, Berlin, 10115, Germany.
Matthijs R PanmanUniversity of Gothenburg, 40530, Gothenburg, Sweden.ORCID http://orcid.org/0000-0003-3853-123X
Alexander BjörlingUniversity of Gothenburg, 40530, Gothenburg, Sweden.
Emil GustavssonUniversity of Gothenburg, 40530, Gothenburg, Sweden.ORCID http://orcid.org/0000-0003-0166-1786
Maria HoernkeUniversity of Gothenburg, 40530, Gothenburg, Sweden.
Ashley J HughesUniversity of Gothenburg, 40530, Gothenburg, Sweden.ORCID http://orcid.org/0000-0002-9468-7442
Léocadie HenryUniversity of Gothenburg, 40530, Gothenburg, Sweden.
Stephan NieblingUniversity of Gothenburg, 40530, Gothenburg, Sweden.
Heikki TakalaUniversity of Gothenburg, 40530, Gothenburg, Sweden.
Janne A IhalainenUniversity of Jyväskylä, 40014, Jyväskylä, Finland.
Gemma NewbyEuropean Synchrotron Radiation Facility, 38000, Grenoble, France.ORCID http://orcid.org/0000-0002-0110-9599
Silke KerruthFreie Universität Berlin, 14195, Berlin, Germany.
Joachim HeberleFreie Universität Berlin, 14195, Berlin, Germany.
Marianne LiebiPaul ScherrerInstitut, 5232, Villigen, Switzerland.
Andreas MenzelPaul ScherrerInstitut, 5232, Villigen, Switzerland.ORCID http://orcid.org/0000-0002-0489-609X
Robert HenningThe University of Chicago, Chicago, IL, 60637, USA.
Irina KoshelevaThe University of Chicago, Chicago, IL, 60637, USA.
Andreas MöglichHumboldt-Universität zu Berlin, Berlin, 10115, Germany. andreas.moeglich@uni-bayreuth.de.
Sebastian WestenhoffUniversity of Gothenburg, 40530, Gothenburg, Sweden. westenho@chem.gu.se.
University of Gothenburg · SEFreie Universität Berlin · DEHumboldt-Universität zu Berlin · DEPaul Scherrer Institute · CHUniversity of Chicago · USEuropean Synchrotron Radiation Facility · FRUniversity of Freiburg · DEUniversity of Helsinki · FIUniversity of Jyväskylä · FI

Funding

BioCARS: A Synchrotron Structure Biology ResourceR24GM111072 · NIGMS · UNIVERSITY OF CHICAGO · PI MOFFAT, JOHN KEITH · 2013 to 2016
$2.3M
NIGMS NIH HHS R24 GM111072
6 · The paper itself

Abstract

Sensor histidine kinases are central to sensing in bacteria and in plants. They usually contain sensor, linker, and kinase modules and the structure of many of these components is known. However, it is unclear how the kinase module is structurally regulated. Here, we use nano- to millisecond time-resolved X-ray scattering to visualize the solution structural changes that occur when the light-sensitive model histidine kinase YF1 is activated by blue light. We find that the coiled coil linker and the attached histidine kinase domains undergo a left handed rotation within microseconds. In a much slower second step, the kinase domains rearrange internally. This structural mechanism presents a template for signal transduction in sensor histidine kinases.Sensor histidine kinases (SHK) consist of sensor, linker and kinase modules and different models for SHK signal transduction have been proposed. Here the authors present nano- to millisecond time-resolved X-ray scattering measurements, which reveal a structural mechanism for kinase domain activation in SHK.

Indexed as

Protein ConformationProtein Structure, SecondaryBacterial ProteinsCrystallography, X-RayHistidine KinaseLightModels, MolecularNanotechnologyProtein DomainsScattering, Small AngleX-Ray DiffractionBacterial ProteinsHistidine Kinase

Identifiers

PMID28819239
PMCPMC5561222
OpenAlexW2743511075

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.