Evidence map›Paper›PMID 28819106›Full record

ArticleScientific reports2017

Identification and Characterization of a Bacterial Homolog of Chloride Intracellular Channel (CLIC) Protein.

Shubha Gururaja Rao, Devasena Ponnalagu, Sowmya Sukur, Harkewal Singh, Shridhar Sanghvi, Yixiao Mei, Ding J Jin, Harpreet Singh

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
1.2field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 31 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Chloride ions in health and disease.Bioscience reports · 2024
    Review
  7. Article
  8. Biomolecules · 2023
    Article
  9. Review
  10. Article
  11. Article
  12. Frontiers in physiology · 2023
    Article
  13. Article
  14. Article
  15. Article
  16. Review
  17. Review
  18. Pharmacological modulation of mitochondrial ion channels.British journal of pharmacology · 2019
    Review
  19. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 1 country.

Shubha Gururaja RaoDepartment of Pharmacology and Physiology, Drexel University College of Medicine, Philadelphia, PA, 19102, USA.
Devasena PonnalaguDepartment of Pharmacology and Physiology, Drexel University College of Medicine, Philadelphia, PA, 19102, USA.
Sowmya SukurDepartment of Pharmacology and Physiology, Drexel University College of Medicine, Philadelphia, PA, 19102, USA.
Harkewal SinghProtein Biochemistry, Life Sciences Research, Beckman Coulter Inc, 11800 SW 147th Ave, Miami, FL, 33196, USA.
Shridhar SanghviDepartment of Pharmacology and Physiology, Drexel University College of Medicine, Philadelphia, PA, 19102, USA.
Yixiao MeiDepartment of Pharmacology and Physiology, Drexel University College of Medicine, Philadelphia, PA, 19102, USA.
Ding J JinRNA Biology Laboratory, National Cancer Institute-Frederick, NIH, MD, 21702, USA.
Harpreet SinghDepartment of Pharmacology and Physiology, Drexel University College of Medicine, Philadelphia, PA, 19102, USA. harpreet.singh@drexelmed.edu.ORCID 0000-0002-6135-1897
Drexel University · USBeckman Coulter Foundation · USNational Cancer Institute · US

Funding

Chloride intracellular channels in cardiac mitochondria and their direct role in cardioprotectionR01HL133050 · NHLBI · OHIO STATE UNIVERSITY · PI SINGH, HARPREET · 2016 to 2020
$2.0M
American Heart Association-American Stroke Association 11SDG7230059American Heart Association-American Stroke Association 16GRNT29430000NHLBI NIH HHS R01 HL133050
6 · The paper itself

Abstract

Chloride intracellular channels (CLIC) are non-classical ion channels lacking a signal sequence for membrane targeting. In eukaryotes, they are implicated in cell volume regulation, acidification, and cell cycle. CLICs resemble the omega class of Glutathione S-transferases (GST), yet differ from them in their ability to form ion channels. They are ubiquitously found in eukaryotes but no prokaryotic homolog has been characterized. We found that indanyloxyacetic acid-94 (IAA-94), a blocker of CLICs, delays the growth of Escherichia coli. In silico analysis showed that the E. coli stringent starvation protein A (SspA) shares sequence and structural homology with CLICs. Similar to CLICs, SspA lacks a signal sequence but contains an omega GST fold. Electrophysiological analysis revealed that SspA auto-inserts into lipid bilayers and forms IAA-94-sensitive ion channels. Substituting the ubiquitously conserved residue leucine 29 to alanine in the pore-forming region increased its single-channel conductance. SspA is essential for cell survival during acid-induced stress, and we found that acidic pH increases the open probability of SspA. Further, IAA-94 delayed the growth of wild-type but not sspA null mutant E. coli. Our results for the first time show that CLIC-like proteins exist in bacteria in the form of SspA, forming functional ion channels.

Indexed as

Amino Acid SubstitutionChloride ChannelsChloridesDNA Mutational AnalysisEnzyme InhibitorsEscherichia coliEscherichia coli ProteinsGenes, EssentialGlycolatesHydrogen-Ion ConcentrationMicrobial ViabilityChloride ChannelsChloridesEnzyme InhibitorsEscherichia coli ProteinsGlycolatesMK 473SspA protein, E coli

Identifiers

PMID28819106
PMCPMC5561075
OpenAlexW2743538305

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.