Evidence map›Paper›PMID 28817678›Full record

ArticlePloS one2017

Family-based exome-wide association study of childhood acute lymphoblastic leukemia among Hispanics confirms role of ARID5B in susceptibility.

Natalie P Archer, Virginia Perez-Andreu, Ulrik Stoltze, Michael E Scheurer, Anna V Wilkinson, Ting-Nien Lin, Maoxiang Qian, Charnise Goodings, Michael D Swartz, Nalini Ranjit and 9 more

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed, 1 pooled it
1.2field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 1 synthesis or guideline pooled it, 18 citations in OpenAlex.

  1. Pooled it
  2. Trial
  3. Article
  4. Genetic susceptibility ofGlobal medical genetics · 2025
    Article
  5. Article
  6. Article
  7. Cancer Progress and Priorities: Childhood Cancer.Cancer epidemiology, biomarkers & prevention : a publication of the American Association for Cancer Research, cosponsored by the American Society of Preventive Oncology · 2020
    Article
  8. Article
  9. Association of genesLeukemia research reports · 2020
    Article
  10. Article
  11. Article
  12. Article
  13. Novel Gene and Network Associations Found for Acute Lymphoblastic Leukemia Using Case-Control and Family-Based Studies in Multiethnic Populations.Cancer epidemiology, biomarkers & prevention : a publication of the American Association for Cancer Research, cosponsored by the American Society of Preventive Oncology · 2017
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors at 7 institutions in 3 countries.

Natalie P ArcherUniversity of Texas School of Public Health, Austin Regional Campus, Austin, Texas, United States of America.
Virginia Perez-AndreuDepartment of Pharmaceutical Sciences, St. Jude Children's Research Hospital, Memphis, Tennessee, United States of America.
Ulrik StoltzeUniversity Hospital Copenhagen, Copenhagen, Denmark.
Michael E ScheurerDepartment of Pediatrics, Section of Hematology-Oncology, Baylor College of Medicine, Houston, Texas, United States of America.
Anna V WilkinsonMichael & Susan Dell Center for Healthy Living, University of Texas Health Science Center at Houston, School of Public Health, Austin Regional Campus, Austin, Texas, United States of America.
Ting-Nien LinDepartment of Pharmaceutical Sciences, St. Jude Children's Research Hospital, Memphis, Tennessee, United States of America.
Maoxiang QianDepartment of Pharmaceutical Sciences, St. Jude Children's Research Hospital, Memphis, Tennessee, United States of America.
Charnise GoodingsDepartment of Pharmaceutical Sciences, St. Jude Children's Research Hospital, Memphis, Tennessee, United States of America.
Michael D SwartzDepartment of Biostatistics, School of Public Health, The University of Texas Health Science Center at Houston, Houston, Texas, United States of America.
Nalini RanjitMichael & Susan Dell Center for Healthy Living, University of Texas Health Science Center at Houston, School of Public Health, Austin Regional Campus, Austin, Texas, United States of America.
Karen R RabinDepartment of Pediatrics, Section of Hematology-Oncology, Baylor College of Medicine, Houston, Texas, United States of America.
Erin C Peckham-GregoryDepartment of Pediatrics, Section of Hematology-Oncology, Baylor College of Medicine, Houston, Texas, United States of America.
Sharon E PlonDepartment of Pediatrics, Section of Hematology-Oncology, Baylor College of Medicine, Houston, Texas, United States of America.
Pedro A de AlarconDepartment of Pediatrics, University of Illinois College of Medicine at Peoria, Peoria, Illinois, United States of America.
Ryan C ZabriskieDepartment of Pediatrics, Section of Hematology-Oncology, Baylor College of Medicine, Houston, Texas, United States of America.
Federico Antillon-KlussmannUnidad Nacional de Oncología Pediátrica, Guatemala City, Guatemala.
Cesar R NajeraUnidad Nacional de Oncología Pediátrica, Guatemala City, Guatemala.
Jun J YangDepartment of Pharmaceutical Sciences, St. Jude Children's Research Hospital, Memphis, Tennessee, United States of America.
Philip J LupoDepartment of Pediatrics, Section of Hematology-Oncology, Baylor College of Medicine, Houston, Texas, United States of America.ORCID http://orcid.org/0000-0003-0978-5863
Baylor College of Medicine · USSt. Jude Children's Research Hospital · USThe University of Texas Health Science Center at Houston · USCopenhagen University Hospital · DKIllinois College · USThe University of Texas at Austin · USUniversidad Francisco Marroquín · GT

Funding

Tumor BiologyP30CA125123 · NCI · BAYLOR COLLEGE OF MEDICINE · PI Michael M Ittmann · 2007 to 2026
$73.9M
ARID5B and disparities of childhood leukemiaU01CA176063 · NCI · ST. JUDE CHILDREN'S RESEARCH HOSPITAL · PI YANG, JUN J. · 2014 to 2018
$2.4M
Training Program in Pediatric Cancer Epidemiology and ControlR25CA160078 · NCI · BAYLOR COLLEGE OF MEDICINE · PI BONDY, MELISSA L., CHANG, SHINE · 2011 to 2015
$1.9M
NCI NIH HHS P30 CA125123NCI NIH HHS R25 CA160078NCI NIH HHS U01 CA176063
6 · The paper itself

Abstract

We conducted an exome-wide association study of childhood acute lymphoblastic leukemia (ALL) among Hispanics to confirm and identify novel variants associated with disease risk in this population. We used a case-parent trio study design; unlike more commonly used case-control studies, this study design is ideal for avoiding issues with population stratification bias among this at-risk ethnic group. Using 710 individuals from 323 Guatemalan and US Hispanic families, two inherited SNPs in ARID5B reached genome-wide level significance: rs10821936, RR = 2.31, 95% CI = 1.70-3.14, p = 1.7×10-8 and rs7089424, RR = 2.22, 95% CI = 1.64-3.01, p = 5.2×10-8. Similar results were observed when restricting our analyses to those with the B-ALL subtype: ARID5B rs10821936 RR = 2.22, 95% CI = 1.63-3.02, p = 9.63×10-8 and ARID5B rs7089424 RR = 2.13, 95% CI = 1.57-2.88, p = 2.81×10-7. Notably, effect sizes observed for rs7089424 and rs10821936 in our study were >20% higher than those reported among non-Hispanic white populations in previous genetic association studies. Our results confirmed the role of ARID5B in childhood ALL susceptibility among Hispanics; however, our assessment did not reveal any strong novel inherited genetic risks for acute lymphoblastic leukemia among this ethnic group.

Indexed as

ExomeGenetic Predisposition to DiseaseGenome-Wide Association StudyAdolescentAllelesChildChild, PreschoolDNA-Binding ProteinsFemaleGenetic Association StudiesGenotypeGuatemalaHispanic or LatinoHumansInfantInfant, NewbornARID5B protein, humanDNA-Binding ProteinsTranscription Factors

Identifiers

PMID28817678
PMCPMC5560704
OpenAlexW2748286944

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.