Evidence map›Paper›PMID 28817122›Full record

ArticleNature protocols2017

Single-cell mechanogenetics using monovalent magnetoplasmonic nanoparticles.

Ji-Wook Kim, Daeha Seo, Jung-Uk Lee, Kaden M Southard, Yongjun Lim, Daehyun Kim, Zev J Gartner, Young-Wook Jun, Jinwoo Cheon

Abstract read
In one paragraph

Article in Nature protocols, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
1.8field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 54 citations in OpenAlex.

  1. Magnetic DNA Origami Nanorotors.Advanced materials (Deerfield Beach, Fla.) · 2026
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  12. Biophysical Approaches for Applying and Measuring Biological Forces.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2022
    Review
  13. Article
  14. Article
  15. Review
  16. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 2 countries.

Ji-Wook KimCenter for Nanomedicine, Institute for Basic Science (IBS), Seoul, Republic of Korea.
Daeha SeoDepartment of Otolaryngology, University of California, San Francisco, San Francisco, California, USA.
Jung-Uk LeeCenter for Nanomedicine, Institute for Basic Science (IBS), Seoul, Republic of Korea.
Kaden M SouthardDepartment of Otolaryngology, University of California, San Francisco, San Francisco, California, USA.
Yongjun LimCenter for Nanomedicine, Institute for Basic Science (IBS), Seoul, Republic of Korea.
Daehyun KimCenter for Nanomedicine, Institute for Basic Science (IBS), Seoul, Republic of Korea.
Zev J GartnerDepartment of Emerging Materials Science, Daegu Gyeongbuk Institute of Science &Technology (DGIST), Daegu, Republic of Korea.
Young-Wook JunCenter for Nanomedicine, Institute for Basic Science (IBS), Seoul, Republic of Korea.ORCID http://orcid.org/0000-0003-3182-5366
Jinwoo CheonCenter for Nanomedicine, Institute for Basic Science (IBS), Seoul, Republic of Korea.
Yonsei University · KRUniversity of California, San Francisco · US

Funding

Rewiring Therapeutic Cells: User-Controlled T Cells and Stem CellsP50GM081879 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI LIM, WENDELL A · 2010 to 2017
$19.0M
RESEARCH TRAINING IN CHEMISTRY AND CHEMICAL BIOLOGYT32GM064337 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI CRAIK, CHARLES SCOTT · 2002 to 2021
$7.8M
Total synthesis of the human mammary glandDP2HD080351 · NICHD · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI GARTNER, ZEV JORDAN · 2013 to 2013
$2.4M
Spatiotemporal Control of Dynamic Notch Signaling with Subcellular ResolutionR01GM112081 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI JUN, YOUNG-WOOK · 2014 to 2018
$1.5M
Spatial Mutation of Membrane Protein Assembly Dynamics Using Nano-ActuatorsR21HL123329 · NHLBI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI JUN, YOUNG-WOOK · 2014 to 2015
$420k
NHLBI NIH HHS R21 HL123329NICHD NIH HHS DP2 HD080351NIGMS NIH HHS P50 GM081879NIGMS NIH HHS R01 GM112081NIGMS NIH HHS T32 GM064337
6 · The paper itself

Abstract

Spatiotemporal interrogation of signal transduction at the single-cell level is necessary to answer a host of important biological questions. This protocol describes a nanotechnology-based single-cell and single-molecule perturbation tool, termed mechanogenetics, that enables precise spatial and mechanical control over genetically encoded cell-surface receptors in live cells. The key components of this tool are a magnetoplasmonic nanoparticle (MPN) actuator that delivers defined spatial and mechanical cues to receptors through target-specific one-to-one engagement and a micromagnetic tweezers (μMT) that remotely controls the magnitude of force exerted on a single MPN. In our approach, a SNAP-tagged cell-surface receptor of interest is conjugated with a single-stranded DNA oligonucleotide, which hybridizes to its complementary oligonucleotide on the MPN. This protocol consists of four major stages: (i) chemical synthesis of MPNs, (ii) conjugation with DNA and purification of monovalent MPNs, (iii) modular targeting of MPNs to cell-surface receptors, and (iv) control of spatial and mechanical properties of targeted mechanosensitive receptors in live cells by adjusting the μMT-to-MPN distance. Using benzylguanine (BG)-functionalized MPNs and model cell lines expressing either SNAP-tagged Notch or vascular endothelial cadherin (VE-cadherin), we provide stepwise instructions for mechanogenetic control of receptor clustering and for mechanical receptor activation. The ability of this method to differentially control spatial and mechanical inputs to targeted receptors makes it particularly useful for interrogating the differential contributions of each individual cue to cell signaling. The entire procedure takes up to 1 week.

Indexed as

Biomechanical PhenomenaCell Line, TumorDNAGenetic TechniquesHumansMagnetsMechanical PhenomenaNanoparticlesNanotechnologyReceptors, Cell SurfaceSingle-Cell AnalysisDNAReceptors, Cell Surface

Identifiers

PMID28817122
PMCPMC5742362
OpenAlexW2749642592

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.